User: aropri

gravatar for aropri
aropri10
Reputation:
10
Status:
New User
Location:
Last seen:
14 hours ago
Joined:
6 months ago
Email:
a*****@albany.edu

Posts by aropri

<prev • 33 results • page 1 of 4 • next >
0
votes
1
answer
108
views
1
answers
Comment: C: Error: No Space left on device
... I tried it again running it in the directory I wanted to save it in and I think it works now. Thank you ...
written 14 days ago by aropri10
0
votes
1
answer
108
views
1
answers
Comment: C: Error: No Space left on device
... Tried changing the path, but gives a permission error now, "Directory unauthorized while creating directory within file system module" Hope someone can help ...
written 14 days ago by aropri10
0
votes
1
answer
108
views
1
answers
Comment: C: Error: No Space left on device
... Did not try this, trying it now, will let you know soon. Thank you. ...
written 14 days ago by aropri10
3
votes
1
answer
108
views
1
answer
Error: No Space left on device
... Hi guys, I am trying to download RNA seq using fastq dump. The reads are paired end reads so I am also splitting them. When I try to download the 24 files, the sra cache for each file is also being downloaded in the home directory where I only 13 gb of space. The first couple of files download in t ...
rna-seq written 14 days ago by aropri10 • updated 14 days ago by genomax91k
0
votes
0
answers
115
views
0
answers
(Closed) Scaling by individual row when plotting heatmap using DEseq2
... Hi, I am trying to create a heatmap of differentially expressed lncRNAs in normal, atypical, dcis, and invasive breast cancer patient samples. I have created a heatmap from the counts file but it creates a color map based of the counts of highest or lowest expressed RNAs not in that specific row bu ...
rna-seq written 9 weeks ago by aropri10
0
votes
1
answer
168
views
1
answers
Comment: C: Differential Gene Expression Using Deseq2
... Thank you will try this ...
written 9 weeks ago by aropri10
0
votes
1
answer
168
views
1
answer
Differential Gene Expression Using Deseq2
... Hi, I am trying to create a heatmap of differentially expressed lncRNAs in normal, atypical, dcis, and invasive breast cancer patient samples. I have created a heatmap from the counts file but that seems to be the cumulative count of the 4 conditions for each lncRNA and the lncRNAs with the highest ...
rna-seq written 9 weeks ago by aropri10 • updated 9 weeks ago by tiago2112871.2k
0
votes
0
answers
134
views
0
answers
Comment: C: Filtering lncRNAs from total RNA
... How do I use the lncRNA gtf file to filter out the lncRNAs from the total RNA that I have aligned using STAR. Hope you can provide a little detail. I am new to RNA seq so any help is appreciated. ...
written 10 weeks ago by aropri10
1
vote
0
answers
134
views
0
answers
Filtering lncRNAs from total RNA
... I am trying to analyze data from patient samples. I took the data of RNA seq from this paper: https://www.mdpi.com/2075-4426/9/2/18/htm I want to look at specifically lncRNAs and how they change from normal to cancer cells. I have done alignment using STAR and ran DEseq2 for differential expression ...
rna-seq written 10 weeks ago by aropri10
0
votes
0
answers
112
views
0
answers
(Closed) Cannot access interactive node
... This is not exactly a ChIP seq question, but when I type in source ~/.bashrc, it does not do anything. Normally I would run the command and it will change from "-bash" to "(base)-bash" and then I could run conda and its commands. Hoping someone can help me figure out why when I type in source~/.bash ...
chip-seq written 3 months ago by aropri10 • updated 3 months ago by JC12k

Latest awards to aropri

Scholar 5 months ago, created an answer that has been accepted. For A: ChIP seq: Trying to use ChIPQC to measure quality of reads

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1791 users visited in the last hour