User: aropri

gravatar for aropri
aropri70
Reputation:
70
Status:
Trusted
Location:
Last seen:
3 weeks, 4 days ago
Joined:
8 months, 3 weeks ago
Email:
a*****@albany.edu

Posts by aropri

<prev • 67 results • page 1 of 7 • next >
1
vote
1
answer
215
views
1
answers
Comment: C: Error in read.table(file = file, header = header, sep = sep, quote = quote, :
... Thank you so much, appreciate all your time and help. ...
written 5 weeks ago by aropri70
0
votes
1
answer
215
views
1
answers
Comment: C: Error in read.table(file = file, header = header, sep = sep, quote = quote, :
... Sounds good, thank you. Last question, does that output show me all, meaning the 10 that are shown, are those it that are duplicated or are there more? ...
written 5 weeks ago by aropri70
0
votes
1
answer
215
views
1
answers
Comment: C: Error in read.table(file = file, header = header, sep = sep, quote = quote, :
... This is the output I am getting: > df <- read_tsv("matrix.txt") Parsed with column specification: cols( Gene = col_character(), `10A` = col_double(), AT1 = col_double(), DCIS = col_double(), CA1 = col_double() ) > df %>% + ren ...
written 5 weeks ago by aropri70 • updated 5 weeks ago by _r_am32k
0
votes
1
answer
215
views
1
answers
Comment: C: Error in read.table(file = file, header = header, sep = sep, quote = quote, :
... Thank you for your answer, and they are gene IDs. I am trying to look at Super Enhancers and how there counts change in different stage of progression in breast cancer. I converted the peak coordinates of super enhancers into gene names so I could utilize DEseq. Some super enhancers have the same ge ...
written 5 weeks ago by aropri70
5
votes
1
answer
215
views
1
answer
Error in read.table(file = file, header = header, sep = sep, quote = quote, : duplicate 'row.names' are not allowed
... Hi guys, I am trying to run DEseq on my count matrix file. However, when I try to import my matrix file using the command: matrix <- read.delim("matrix.txt", header=T, sep="\t", check.names = FALSE, row.names=1) I get this error: Error in read.table(file = file, header = header, sep ...
R rna-seq written 5 weeks ago by aropri70 • updated 5 weeks ago by _r_am32k
1
vote
1
answer
342
views
1
answers
Comment: C: Error: SortDetails.cpp, 1111: Unable to create FILE* for temp file: No space lef
... Thank you so much Alex, this command worked and I was able to get coverage of the bed file using the corresponding bam file. Appreciate your time and help. ...
written 6 weeks ago by aropri70
0
votes
1
answer
342
views
1
answers
Comment: C: Error: SortDetails.cpp, 1111: Unable to create FILE* for temp file: No space lef
... Ok, will do, thank you so much for your time in helping me. ...
written 6 weeks ago by aropri70
0
votes
1
answer
342
views
1
answers
Comment: C: Error: SortDetails.cpp, 1111: Unable to create FILE* for temp file: No space lef
... Alex you had helped me out with another question of mine where I was looking to find coverage of my bed file using the associated bam file. So the command I am using is the following: bedmap --skip-unmapped --delim '\t' --echo --count --bases-uniq --echo-ref-size --bases-uniq-f CombinedSE.sorte ...
written 6 weeks ago by aropri70 • updated 6 weeks ago by _r_am32k
0
votes
1
answer
342
views
1
answers
Comment: C: Error: SortDetails.cpp, 1111: Unable to create FILE* for temp file: No space lef
... Sorry, but trying Alex's method, will hopefully soon check the mark. ...
written 6 weeks ago by aropri70
1
vote
1
answer
342
views
1
answers
Comment: C: Error: SortDetails.cpp, 1111: Unable to create FILE* for temp file: No space lef
... Thank you Ram for your help in this. Really appreciative of the help you give us all in helping troubleshoot errors we encounter. ...
written 7 weeks ago by aropri70

Latest awards to aropri

Scholar 8 months ago, created an answer that has been accepted. For A: ChIP seq: Trying to use ChIPQC to measure quality of reads

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1124 users visited in the last hour