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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
18 days ago by mropri ▴ 150
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1
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589
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
19 days ago by mropri ▴ 150
0
votes
0
replies
589
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
19 days ago by mropri ▴ 150
0
votes
1
reply
589
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
22 days ago by mropri ▴ 150
1
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7
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589
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Before doing pseudobulk, should we get rid of genes that are only expressed in a small number of cells?
DESeq2 scRNAseq Pseudobulk
18 days ago by mropri ▴ 150
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347
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
23 days ago by mropri ▴ 150
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1
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347
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
23 days ago by mropri ▴ 150
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5
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347
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How to account for total number of cells when aggregating for pseudobulk?
Pseudobulk
updated 22 days ago by 84k • written 23 days ago by ▴ 150
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0
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687
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Comment: Comment: Why does DESeq2 give negative log2 fold change in treatment vs control for some
4 weeks ago by mropri ▴ 150
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2
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687
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Why does DESeq2 give negative log2 fold change in treatment vs control for some genes when normalized counts are higher in treatment? (Already checke…
DESeq2
4 weeks ago by mropri ▴ 150
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0
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480
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Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
10 weeks ago by mropri ▴ 150
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3
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480
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Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
10 weeks ago by mropri ▴ 150
0
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0
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480
views
Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
updated 11 weeks ago by 144k • written 11 weeks ago by ▴ 150
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0
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353
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Comment: Comment: Wilcox test using data slot (log normalized count values) of scRNA-seq between t
3 months ago by mropri ▴ 150
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2
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353
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Wilcox test using data slot (log normalized count values) of scRNA-seq between two groups
scRNAseq
3 months ago by mropri ▴ 150
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1
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425
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Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
3 months ago by mropri ▴ 150
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3
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425
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Calculating percentage of cells proliferating in single cell rna seq data
statistics scRNA-seq proliferation
updated 6 days ago by • 0 • written 3 months ago by ▴ 150
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2
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2.4k
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ROSE Algorithm for Ranking Super Enhancers
ChIP-Seq
updated 5 months ago by 44k • written 4.1 years ago by ▴ 150
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0
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830
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Comment: Comment: Is it necessary to integrate again samples when subclustering
6 months ago by mropri ▴ 150
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2
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830
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Is it necessary to integrate again samples when subclustering
scRNA-seq integration Single-cell
updated 6 months ago by 44k • written 6 months ago by ▴ 150
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797
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Comment: Comment: Single Cell RNA-seq analysis one by one vs all together
6 months ago by mropri ▴ 150
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0
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230
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Running MultiK on one single cell sample, is it that memory intensive
MultiK Single-Cell
updated 6 months ago by 44k • written 6 months ago by ▴ 150
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2
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797
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Single Cell RNA-seq analysis one by one vs all together
scRNA-seq single-cell
6 months ago by mropri ▴ 150
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0
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304
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Check if BAMboozle anonymized bam files
BAMboozle
12 months ago by mropri ▴ 150
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0
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1.1k
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Comment: Comment: BAMboozle
14 months ago by mropri ▴ 150
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0
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897
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Comment: Comment: Picard ribosome intervals list
14 months ago by mropri ▴ 150
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1
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1.1k
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Comment: Comment: BAMboozle
14 months ago by mropri ▴ 150
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0
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1.1k
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Comment: Comment: BAMboozle
14 months ago by mropri ▴ 150
0
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2
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1.1k
views
Comment: Comment: BAMboozle
updated 14 months ago by 101k • written 14 months ago by ▴ 150
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8
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1.1k
views
BAMboozle
BAMboozle
14 months ago by mropri ▴ 150
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1
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897
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Comment: Comment: Picard ribosome intervals list
updated 14 months ago by 144k • written 14 months ago by ▴ 150
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3
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897
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Picard ribosome intervals list
Picard
14 months ago by mropri ▴ 150
0
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1
reply
1.4k
views
Cannot install limma
bioconductor limma
updated 15 months ago by ▴ 610 • written 15 months ago by ▴ 150
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0
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1.3k
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Comment: Comment: Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
15 months ago by mropri ▴ 150
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0
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1.3k
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Comment: Comment: I am trying to get an older version of SVA (Surrogate Variable Analysis) in R us
15 months ago by mropri ▴ 150
2
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6
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1.3k
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Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
Bioconductor SVA
15 months ago by mropri ▴ 150
1
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0
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548
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Comment: Comment: Power analysis for patient samples
16 months ago by mropri ▴ 150
3
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2
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548
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Power analysis for patient samples
RNA-seq
16 months ago by mropri ▴ 150
0
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0
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1.3k
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Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
17 months ago by mropri ▴ 150
0
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0
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1.3k
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Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
17 months ago by mropri ▴ 150
6
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6
replies
1.3k
views
Use single cell sequencing bam file to tell if a patient has a mutation
Cell Single RNA sequencing
17 months ago by mropri ▴ 150
0
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1
reply
1.3k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
17 months ago by mropri ▴ 150
0
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0
replies
861
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Comment: Comment: GO analysis where I can set by own set of genes to search against
21 months ago by mropri ▴ 150
0
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0
replies
861
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Comment: Comment: GO analysis where I can set by own set of genes to search against
21 months ago by mropri ▴ 150
0
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2
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861
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Comment: Comment: GO analysis where I can set by own set of genes to search against
21 months ago by mropri ▴ 150
0
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6
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861
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GO analysis where I can set by own set of genes to search against
Analysis GO
21 months ago by mropri ▴ 150
2
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5
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1.4k
views
Sabre demultiplexer
demultiplexing Sabre RNA-seq
updated 22 months ago by 144k • written 2.1 years ago by ▴ 150
0
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0
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452
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Corr.test method
Correlation corr.test r
23 months ago by mropri ▴ 150
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0
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2.6k
views
Comment: Comment: Creating a script to run STAR alignment on multiple fastq files
2.1 years ago by mropri ▴ 150
0
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0
replies
2.6k
views
Comment: Comment: Creating a script to run STAR alignment on multiple fastq files
2.1 years ago by mropri ▴ 150
139 results • Page 1 of 3
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