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Comment: Comment: Normalizing Peaks in ChIP seq
4 months ago by mropri ▴ 170
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3
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534
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Normalizing Peaks in ChIP seq
ChIP-seq
updated 4 months ago by 45k • written 4 months ago by ▴ 170
1
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0
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379
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Calculating if cell proportions are significant using propeller
regression proportions scRNA-seq
9 months ago by mropri ▴ 170
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0
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1.0k
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Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
11 months ago by mropri ▴ 170
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0
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1.6k
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
12 months ago by mropri ▴ 170
0
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1
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1.6k
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
12 months ago by mropri ▴ 170
0
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0
replies
1.6k
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
12 months ago by mropri ▴ 170
0
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1
reply
1.6k
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
12 months ago by mropri ▴ 170
1
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7
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1.6k
views
Before doing pseudobulk, should we get rid of genes that are only expressed in a small number of cells?
DESeq2 scRNAseq Pseudobulk
12 months ago by mropri ▴ 170
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0
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1.7k
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
12 months ago by mropri ▴ 170
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1
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1.7k
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
12 months ago by mropri ▴ 170
3
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5
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1.7k
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How to account for total number of cells when aggregating for pseudobulk?
Pseudobulk
updated 12 months ago by 88k • written 12 months ago by ▴ 170
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0
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1.3k
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Comment: Comment: Why does DESeq2 give negative log2 fold change in treatment vs control for some
12 months ago by mropri ▴ 170
2
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2
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1.3k
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Why does DESeq2 give negative log2 fold change in treatment vs control for some genes when normalized counts are higher in treatment? (Already checke…
DESeq2
12 months ago by mropri ▴ 170
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0
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1.1k
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Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
14 months ago by mropri ▴ 170
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3
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1.1k
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Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
14 months ago by mropri ▴ 170
0
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0
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1.1k
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Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
updated 14 months ago by 152k • written 14 months ago by ▴ 170
0
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0
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969
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Comment: Comment: Wilcox test using data slot (log normalized count values) of scRNA-seq between t
14 months ago by mropri ▴ 170
0
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2
replies
969
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Wilcox test using data slot (log normalized count values) of scRNA-seq between two groups
scRNAseq
14 months ago by mropri ▴ 170
0
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1
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1.0k
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Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
15 months ago by mropri ▴ 170
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4
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1.0k
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Calculating percentage of cells proliferating in single cell rna seq data
statistics scRNA-seq proliferation
11 months ago by mropri ▴ 170
0
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2
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2.8k
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ROSE Algorithm for Ranking Super Enhancers
ChIP-Seq
updated 17 months ago by 45k • written 5.0 years ago by ▴ 170
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1
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2.0k
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Comment: Comment: Is it necessary to integrate again samples when subclustering
18 months ago by mropri ▴ 170
1
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3
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2.0k
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Is it necessary to integrate again samples when subclustering
scRNA-seq integration Single-cell
updated 3 months ago by • 0 • written 18 months ago by ▴ 170
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0
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1.6k
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Comment: Comment: Single Cell RNA-seq analysis one by one vs all together
18 months ago by mropri ▴ 170
0
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0
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372
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Running MultiK on one single cell sample, is it that memory intensive
MultiK Single-Cell
updated 18 months ago by 45k • written 18 months ago by ▴ 170
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2
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1.6k
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Single Cell RNA-seq analysis one by one vs all together
scRNA-seq single-cell
18 months ago by mropri ▴ 170
0
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0
replies
447
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Check if BAMboozle anonymized bam files
BAMboozle
2.0 years ago by mropri ▴ 170
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0
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1.8k
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Comment: Comment: BAMboozle
2.2 years ago by mropri ▴ 170
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0
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1.4k
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Comment: Comment: Picard ribosome intervals list
2.2 years ago by mropri ▴ 170
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1
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1.8k
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Comment: Comment: BAMboozle
2.2 years ago by mropri ▴ 170
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0
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1.8k
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Comment: Comment: BAMboozle
2.2 years ago by mropri ▴ 170
0
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2
replies
1.8k
views
Comment: Comment: BAMboozle
updated 2.2 years ago by 102k • written 2.2 years ago by ▴ 170
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8
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1.8k
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BAMboozle
BAMboozle
2.2 years ago by mropri ▴ 170
0
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1
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1.4k
views
Comment: Comment: Picard ribosome intervals list
updated 2.2 years ago by 152k • written 2.2 years ago by ▴ 170
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3
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1.4k
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Picard ribosome intervals list
Picard
2.2 years ago by mropri ▴ 170
0
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1
reply
2.3k
views
Cannot install limma
bioconductor limma
updated 2.3 years ago by ▴ 620 • written 2.3 years ago by ▴ 170
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0
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1.9k
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Comment: Comment: Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
2.3 years ago by mropri ▴ 170
0
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0
replies
1.9k
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Comment: Comment: I am trying to get an older version of SVA (Surrogate Variable Analysis) in R us
2.3 years ago by mropri ▴ 170
2
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6
replies
1.9k
views
Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
Bioconductor SVA
2.3 years ago by mropri ▴ 170
1
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0
replies
862
views
Comment: Comment: Power analysis for patient samples
2.3 years ago by mropri ▴ 170
3
votes
2
replies
862
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Power analysis for patient samples
RNA-seq
2.3 years ago by mropri ▴ 170
0
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0
replies
2.2k
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Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
2.4 years ago by mropri ▴ 170
0
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0
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2.2k
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Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
2.4 years ago by mropri ▴ 170
6
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6
replies
2.2k
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Use single cell sequencing bam file to tell if a patient has a mutation
Cell Single RNA sequencing
2.4 years ago by mropri ▴ 170
0
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1
reply
2.2k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
2.4 years ago by mropri ▴ 170
0
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0
replies
1.3k
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Comment: Comment: GO analysis where I can set by own set of genes to search against
2.8 years ago by mropri ▴ 170
0
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0
replies
1.3k
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Comment: Comment: GO analysis where I can set by own set of genes to search against
2.8 years ago by mropri ▴ 170
0
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2
replies
1.3k
views
Comment: Comment: GO analysis where I can set by own set of genes to search against
2.8 years ago by mropri ▴ 170
0
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6
replies
1.3k
views
GO analysis where I can set by own set of genes to search against
Analysis GO
2.8 years ago by mropri ▴ 170
143 results • Page 1 of 3
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