ROSE Algorithm for Ranking Super Enhancers
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3.8 years ago
mropri ▴ 150

I am trying to run ROSE after I have gotten my peak files and converted them to gff. I tried to use ROSE and it seemed ROSE_main.py failed to call ROSE_bamToGFF.py, with the following message: sh: ROSE_bamToGFF.py: command not found I called ROSE_main.py in the same folder that does contain ROSE_bamToGFF.py and I do not understand why this error occurred. BTW, I was able to call ROSE_bamToGFF.py by python ROSE_bamToGFF.py. Any help is appreciated.

ChIP-Seq • 2.2k views
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you may try to type ./ROSE_main.py

Good luck

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