User: Seraph

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Seraph0
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Posts by Seraph

<prev • 23 results • page 1 of 3 • next >
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Comment: C: Missing pseudogenes in annotation report
... Hi ugurcabuk I tried to use this tool, but as I am a beginner, I am still facing this problem; https://www.biostars.org/p/448340/ ...
written 24 days ago by Seraph0
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vecscreen results of bacterial scaffolds
... Hi all, Through the WGS analysis process of my illumina high-seq reads (bacteria), I used NCBI Vecscreen tool, to remove the possible contamination. results of the vec-screening showed me : **Strong match**: 43133-43183, 125079-125855, 127487-128489, 584484-585566, 1801604-1802631, 2193142-2195 ...
genome written 25 days ago by Seraph0
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Comment: C: Missing pseudogenes in annotation report
... Thanks ugurcabuk for the answer. I wonder if it's essential to find pseudogenes in order to publish a draft genome, and submit it into NCBI !! ...
written 25 days ago by Seraph0
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Missing pseudogenes in annotation report
... Hi all, I used spades for assembly of bacteria-Illumina reads, and galaxy-Prokka for annotation Visualization of the annotation results showed me: Summary of the active entries: contigs: 65 bases: 5736331 CDS: 5102 gene: 5279 misc_RNA: 52 rRNA: 9 tRNA: 115 tmRNA: 1 1- how can I confirm t ...
assembly written 26 days ago by Seraph0
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NCBI PGAP yami file
... Hi all, in the NCBI PGAP using-guide, they mentioned that using this pipeline requires three files; A fasta file. A YAML file containing metadata (usually called submol.yaml). A YAML file that describes the pipeline inputs, including the above two files. However, I have only the fasta file ge ...
genome written 27 days ago by Seraph0 • updated 21 days ago by ahmedbanhawy0
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Comment: C: NCBI Contamination Screen
... Thanks it works well ...
written 4 weeks ago by Seraph0
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Comment: C: NCBI Contamination Screen
... Hi, biomax, please check the edited question. Thanks in advance for your valuable answers ...
written 4 weeks ago by Seraph0
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Comment: C: QC prior to bacterial genome assembly
... I Modified it again, thanks ...
written 4 weeks ago by Seraph0
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Comment: C: QC prior to bacterial genome assembly
... I re-uploaded the photos ...
written 4 weeks ago by Seraph0
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Comment: C: QC prior to bacterial genome assembly
... thanks, h.mon, I modified the post... ...
written 4 weeks ago by Seraph0

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