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replies
1.7k
views
Comment:
Comment: How do we handle TPM values after converting from Ensembl to HUGO genes?
3.6 years ago by
Jordan
★ 1.3k
1
vote
1
reply
1.9k
views
Comment:
C: How do you know the best segments in cnvkit after filtering?
4.6 years ago by
Jordan
★ 1.3k
0
votes
1
reply
1.6k
views
Comment:
C: The center in scatter plot generated by CNVkit looks off
4.6 years ago by
Jordan
★ 1.3k
0
votes
1
reply
1.6k
views
Comment:
C: The center in scatter plot generated by CNVkit looks off
4.6 years ago by
Jordan
★ 1.3k
0
votes
0
replies
2.9k
views
Comment:
C: How are the log2 values in CNVkit .cnr files calculated?
4.6 years ago by
Jordan
★ 1.3k
0
votes
1
reply
3.4k
views
Comment:
Comment: Empty SomaticSniper Output Files
updated 4.8 years ago by
Ram
44k • written 10.4 years ago by
Jordan
★ 1.3k
0
votes
1
reply
3.0k
views
Comment:
A: Convert Phred score 41 to 40
updated 4.8 years ago by
Ram
44k • written 10.4 years ago by
Jordan
★ 1.3k
0
votes
0
replies
3.8k
views
Comment:
C: Find mismatch and INDEL position
updated 4.8 years ago by
Ram
44k • written 10.4 years ago by
Jordan
★ 1.3k
1
vote
1
reply
2.8k
views
Comment:
C: csfasta malformed qualities
updated 4.8 years ago by
Ram
44k • written 10.4 years ago by
Jordan
★ 1.3k
0
votes
1
reply
3.9k
views
Comment:
C: Can anyone tell me the frequency percentage given by varscan2 is for individual
updated 4.8 years ago by
Ram
44k • written 10.4 years ago by
Jordan
★ 1.3k
0
votes
1
reply
3.4k
views
Comment:
C: Empty SomaticSniper Output Files
updated 4.8 years ago by
Ram
44k • written 10.4 years ago by
Jordan
★ 1.3k
0
votes
0
replies
3.6k
views
Comment:
C: Need help using Shrimp2 on paired end SOLiD data.
updated 4.9 years ago by
Ram
44k • written 10.6 years ago by
Jordan
★ 1.3k
0
votes
0
replies
3.6k
views
Comment:
C: Need help using Shrimp2 on paired end SOLiD data.
updated 4.9 years ago by
Ram
44k • written 10.6 years ago by
Jordan
★ 1.3k
0
votes
1
reply
4.7k
views
Comment:
C: Need help understanding read depth for somaticsniper vcf's
updated 5.4 years ago by
Ram
44k • written 10.3 years ago by
Jordan
★ 1.3k
0
votes
1
reply
4.7k
views
Comment:
C: Need help understanding read depth for somaticsniper vcf's
updated 5.4 years ago by
Ram
44k • written 10.3 years ago by
Jordan
★ 1.3k
0
votes
1
reply
4.7k
views
Comment:
C: Need help understanding read depth for somaticsniper vcf's
updated 5.4 years ago by
Ram
44k • written 10.3 years ago by
Jordan
★ 1.3k
0
votes
0
replies
4.3k
views
Comment:
C: Input Error Using Varscan2.3
updated 5.8 years ago by
Ram
44k • written 10.6 years ago by
Jordan
★ 1.3k
0
votes
0
replies
1.5k
views
Comment:
C: Tools for asserting matching pairs of samples from the same patient
6.8 years ago by
Jordan
★ 1.3k
0
votes
1
reply
13k
views
Comment:
Comment: Add read group to header after samtools merge
updated 2.7 years ago by
Ram
44k • written 9.4 years ago by
Jordan
★ 1.3k
1
vote
0
replies
4.6k
views
Comment:
Comment: TCGA normalized count data of 1000 samples for DGE
updated 21 months ago by
Ram
44k • written 9.5 years ago by
Jordan
★ 1.3k
0
votes
1
reply
4.7k
views
Comment:
C: NOT RESETTING NORMAL error using Varscan2
9.9 years ago by
Jordan
★ 1.3k
0
votes
0
replies
8.6k
views
Comment:
C: Mark Duplicates from Picard does not seem to recognize my sorted BAM files.
9.9 years ago by
Jordan
★ 1.3k
1
vote
2
replies
7.0k
views
Comment:
C: Can you add a label key to heatscatter plot in R?
10.1 years ago by
Jordan
★ 1.3k
0
votes
1
reply
5.7k
views
Comment:
Comment: Why Is Tophat Reporting Secondary Alignments Even When The Option To Do So Is Tu
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
Jordan
★ 1.3k
0
votes
0
replies
3.4k
views
Comment:
Comment: Problem generating VCFs from MuTect variant caller
updated 2.8 years ago by
Ram
44k • written 10.1 years ago by
Jordan
★ 1.3k
0
votes
1
reply
9.4k
views
Comment:
C: Variant callers for Ion Torrent data?
10.2 years ago by
Jordan
★ 1.3k
0
votes
0
replies
9.4k
views
Comment:
Comment: Variant callers for Ion Torrent data?
updated 2.9 years ago by
Ram
44k • written 10.2 years ago by
Jordan
★ 1.3k
0
votes
1
reply
7.2k
views
Comment:
C: Need help understading gene representation in IGV browser
10.4 years ago by
Jordan
★ 1.3k
1
vote
0
replies
3.8k
views
Comment:
C: Find mismatch and INDEL position
10.4 years ago by
Jordan
★ 1.3k
0
votes
0
replies
3.3k
views
Comment:
C: Unexpected Cufflinks output when using .gtf file as guide
10.4 years ago by
Jordan
★ 1.3k
0
votes
1
reply
2.5k
views
Comment:
C: Is there a way to know which variant caller has been used for calling variants i
10.5 years ago by
Jordan
★ 1.3k
0
votes
0
replies
8.6k
views
Comment:
C: Mark Duplicates from Picard does not seem to recognize my sorted BAM files.
10.5 years ago by
Jordan
★ 1.3k
0
votes
0
replies
8.6k
views
Comment:
C: Mark Duplicates from Picard does not seem to recognize my sorted BAM files.
10.5 years ago by
Jordan
★ 1.3k
0
votes
0
replies
3.6k
views
Comment:
C: Need help using Shrimp2 on paired end SOLiD data.
10.6 years ago by
Jordan
★ 1.3k
0
votes
1
reply
3.3k
views
Comment:
C: Random Variance T-Test In R?
10.7 years ago by
Jordan
★ 1.3k
0
votes
0
replies
5.4k
views
Comment:
C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.7 years ago by
Jordan
★ 1.3k
0
votes
1
reply
5.4k
views
Comment:
C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.7 years ago by
Jordan
★ 1.3k
0
votes
1
reply
5.4k
views
Comment:
C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.7 years ago by
Jordan
★ 1.3k
0
votes
1
reply
5.4k
views
Comment:
C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.7 years ago by
Jordan
★ 1.3k
0
votes
1
reply
5.4k
views
Comment:
C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.7 years ago by
Jordan
★ 1.3k
0
votes
0
replies
4.8k
views
Comment:
C: How To Get The Number Of Samples And Sample Tcga Id'S That Are Reported In Tcga
10.8 years ago by
Jordan
★ 1.3k
0
votes
1
reply
6.5k
views
Comment:
C: How To Include Biological And Technical Replicates While Using Mirdeep2 For Mirn
10.8 years ago by
Jordan
★ 1.3k
0
votes
1
reply
6.1k
views
Comment:
C: How To Deal With Technical And Biological Replicates With Tophat2 For Rna-Seq Da
11.0 years ago by
Jordan
★ 1.3k
0
votes
0
replies
6.6k
views
Comment:
C: Error While Running Cuffdiff On Multiple Bam Files Of A Group
11.0 years ago by
Jordan
★ 1.3k
0
votes
1
reply
6.6k
views
Comment:
C: Error While Running Cuffdiff On Multiple Bam Files Of A Group
11.0 years ago by
Jordan
★ 1.3k
0
votes
0
replies
4.9k
views
Comment:
C: How To Identify Large Arrangements And Transposable Elements In Ngs Data?
11.1 years ago by
Jordan
★ 1.3k
0
votes
0
replies
3.7k
views
Comment:
C: Problem Generating Copy Number Variants Using Varscan2.
11.2 years ago by
Jordan
★ 1.3k
0
votes
0
replies
3.6k
views
Comment:
C: Why Is The Variant File Produced By Samtools So Large? It Is About ~34G.
11.3 years ago by
Jordan
★ 1.3k
0
votes
1
reply
8.1k
views
Comment:
C: Add Dp Tag To Genotype Field Of Vcf File
11.3 years ago by
Jordan
★ 1.3k
1
vote
0
replies
2.6k
views
Comment:
C: Protein Count Matrix In Perl
11.4 years ago by
Jordan
★ 1.3k
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