Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
0
replies
665
views
Comment: Comment: Why are the basics so complicated? Basic coverage filtering for VCF files
19 days ago by DBScan ▴ 300
0
votes
0
replies
798
views
Comment: Comment: t-test in two groups, multiple rows
6 weeks ago by DBScan ▴ 300
0
votes
0
replies
791
views
Answer: Answer: gnomAD4.0 Hail Table Downloading
6 weeks ago by DBScan ▴ 300
1
vote
0
replies
393
views
Comment: Comment: HLA genotyping of whole genome sequencing data
8 weeks ago by DBScan ▴ 300
3
votes
1
reply
985
views
Answer: Answer: Nextflow and self-made pipelines opinion
8 weeks ago by DBScan ▴ 300
1
vote
0
replies
347
views
Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
8 weeks ago by DBScan ▴ 300
0
votes
1
reply
347
views
Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
8 weeks ago by DBScan ▴ 300
0
votes
1
reply
814
views
Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
9 weeks ago by DBScan ▴ 300
0
votes
1
reply
814
views
Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
9 weeks ago by DBScan ▴ 300
0
votes
1
reply
433
views
Answer: Answer: how to extract variants from the vcf.gz files linked below?
9 weeks ago by DBScan ▴ 300
0
votes
1
reply
260
views
Comment: Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
10 weeks ago by DBScan ▴ 300
0
votes
0
replies
468
views
Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
10 weeks ago by DBScan ▴ 300
0
votes
1
reply
468
views
Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
11 weeks ago by DBScan ▴ 300
0
votes
1
reply
468
views
Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
11 weeks ago by DBScan ▴ 300
0
votes
0
replies
652
views
Comment: Comment: difference betwween hail and plink
11 weeks ago by DBScan ▴ 300
1
vote
1
reply
412
views
Answer: Answer: What is the best GWAS tool to use for a very large cohort data (UK Biobank data)
11 weeks ago by DBScan ▴ 300
0
votes
0
replies
588
views
Comment: Comment: PCA plot interpretation (single population)
12 weeks ago by DBScan ▴ 300
0
votes
1
reply
587
views
Answer: Answer: fill-from-fasta doesnt fill missing values in REF
3 months ago by DBScan ▴ 300
0
votes
0
replies
496
views
Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
3 months ago by DBScan ▴ 300
1
vote
1
reply
548
views
Answer: Answer: Suggestions for a simpler solution for collecting snakemake rule output in a tex
3 months ago by DBScan ▴ 300
0
votes
0
replies
702
views
Comment: Comment: Problem with DRAGEN RNAseq hashtable directory
3 months ago by DBScan ▴ 300
0
votes
2
replies
702
views
Answer: Answer: Problem with DRAGEN RNAseq hashtable directory
3 months ago by DBScan ▴ 300
1
vote
0
replies
350
views
Answer: Answer: how to merge two files without duplicating same column
3 months ago by DBScan ▴ 300
1
vote
1
reply
702
views
Comment: Comment: GIAB Benchmarking
3 months ago by DBScan ▴ 300
0
votes
1
reply
628
views
Comment: Comment: Calculating number of SNPs in linkage disequilibrium at different thresholds fro
3 months ago by DBScan ▴ 300
0
votes
0
replies
414
views
Comment: Comment: GATK version check failed
3 months ago by DBScan ▴ 300
1
vote
0
replies
893
views
Comment: Comment: Problem in installing 'magick' R package
5 months ago by DBScan ▴ 300
2
votes
1
reply
857
views
Answer: Answer: Snakemake alignment script
7 months ago by DBScan ▴ 300
0
votes
0
replies
593
views
Comment: Comment: Saving the output of LD pruning from SNPRelate package as a new GDS file
7 months ago by DBScan ▴ 300
0
votes
0
replies
505
views
Answer: Answer: VCF QUAL field for multiple samples
7 months ago by DBScan ▴ 300
1
vote
2
replies
1.2k
views
Comment: Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
8 months ago by DBScan ▴ 300
1
vote
1
reply
1.2k
views
Comment: Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
8 months ago by DBScan ▴ 300
0
votes
1
reply
698
views
Answer: Answer: BWA-mem2 vs Bowtie2: no deterministic option
8 months ago by DBScan ▴ 300
3
votes
1
reply
1.2k
views
Answer: Answer: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
8 months ago by DBScan ▴ 300
0
votes
0
replies
753
views
Answer: Answer: vcf file
8 months ago by DBScan ▴ 300
0
votes
0
replies
1.6k
views
Answer: Answer: The result of Illumina/hap.py using the same file.
8 months ago by DBScan ▴ 300
1
vote
1
reply
1.3k
views
Answer: Answer: How to liftover SNP positions from one genome to another genome?
9 months ago by DBScan ▴ 300
0
votes
1
reply
748
views
Comment: Comment: bcftools view to failed reader data
9 months ago by DBScan ▴ 300
2
votes
1
reply
748
views
Answer: Answer: bcftools view to failed reader data
9 months ago by DBScan ▴ 300
1
vote
1
reply
3.0k
views
Comment: Comment: Conda/Mamba environment activation error
9 months ago by DBScan ▴ 300
2
votes
1
reply
3.0k
views
Answer: Answer: Conda/Mamba environment activation error
9 months ago by DBScan ▴ 300
0
votes
0
replies
1.1k
views
Answer: Answer: Rstudio server in Snakemake
9 months ago by DBScan ▴ 300
1
vote
0
replies
1.1k
views
Comment: Comment: Qualimap multi-bamqc input file
9 months ago by DBScan ▴ 300
1
vote
1
reply
1.1k
views
Comment: Comment: Qualimap multi-bamqc input file
9 months ago by DBScan ▴ 300
0
votes
1
reply
695
views
Comment: Comment: whole genome sequencing and assembly
9 months ago by DBScan ▴ 300
0
votes
1
reply
695
views
Comment: Comment: whole genome sequencing and assembly
9 months ago by DBScan ▴ 300
0
votes
1
reply
709
views
Comment: Comment: Deepvariant and input CRAM files
9 months ago by DBScan ▴ 300
0
votes
0
replies
497
views
Answer: Answer: BWA MEM -K option
9 months ago by DBScan ▴ 300
0
votes
1
reply
689
views
Answer: Answer: strelka variant calling
9 months ago by DBScan ▴ 300
0
votes
1
reply
774
views
Comment: Comment: Launched: Genozip 15 with co-compression of BAM and FASTQ
10 months ago by DBScan ▴ 300
71 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6