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3
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306
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Answer: Answer: Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DR
4 days ago by DBScan ▴ 380
1
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0
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249
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Answer: Answer: batchtools_slurm job setting with seurat
5 days ago by DBScan ▴ 380
0
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0
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666
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Answer: Answer: looking for 1000g hg38 reference data to anchor with my genomic data to plot th
8 days ago by DBScan ▴ 380
2
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3
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301
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Snakemake rule to copy files
snakemake
updated 8 days ago by ▴ 520 • written 9 days ago by ▴ 380
2
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0
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301
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Answer: Answer: Snakemake rule to copy files
8 days ago by DBScan ▴ 380
0
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1
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250
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Answer: Answer: Add tags/ header lines to a vcf file
7 weeks ago by DBScan ▴ 380
0
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1
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537
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
8 weeks ago by DBScan ▴ 380
2
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1
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537
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
8 weeks ago by DBScan ▴ 380
1
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1
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516
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Comment: Comment: How to get the ratio of allele counts from GATK derived VCF file?
9 weeks ago by DBScan ▴ 380
0
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0
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214
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Comment: Comment: DRAGEN gVCF files and joint calling GATK-GenomicsDB
9 weeks ago by DBScan ▴ 380
0
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0
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945
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Comment: Comment: Why are the basics so complicated? Basic coverage filtering for VCF files
3 months ago by DBScan ▴ 380
0
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0
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984
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Comment: Comment: t-test in two groups, multiple rows
4 months ago by DBScan ▴ 380
0
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0
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1.0k
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Answer: Answer: gnomAD4.0 Hail Table Downloading
4 months ago by DBScan ▴ 380
1
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0
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538
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Comment: Comment: HLA genotyping of whole genome sequencing data
5 months ago by DBScan ▴ 380
3
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1
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1.5k
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Answer: Answer: Nextflow and self-made pipelines opinion
5 months ago by DBScan ▴ 380
1
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0
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511
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
5 months ago by DBScan ▴ 380
0
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1
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511
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
5 months ago by DBScan ▴ 380
0
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1
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1.3k
views
Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
5 months ago by DBScan ▴ 380
0
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1
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1.3k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
5 months ago by DBScan ▴ 380
0
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1
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613
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Answer: Answer: how to extract variants from the vcf.gz files linked below?
5 months ago by DBScan ▴ 380
0
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1
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321
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Comment: Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
5 months ago by DBScan ▴ 380
0
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0
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607
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
5 months ago by DBScan ▴ 380
0
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1
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607
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
5 months ago by DBScan ▴ 380
0
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1
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607
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
5 months ago by DBScan ▴ 380
0
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0
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873
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Comment: Comment: difference betwween hail and plink
5 months ago by DBScan ▴ 380
1
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1
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561
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Answer: Answer: What is the best GWAS tool to use for a very large cohort data (UK Biobank data)
5 months ago by DBScan ▴ 380
0
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0
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762
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Comment: Comment: PCA plot interpretation (single population)
5 months ago by DBScan ▴ 380
0
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1
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782
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Answer: Answer: fill-from-fasta doesnt fill missing values in REF
6 months ago by DBScan ▴ 380
0
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0
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692
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
6 months ago by DBScan ▴ 380
1
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1
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679
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Answer: Answer: Suggestions for a simpler solution for collecting snakemake rule output in a tex
6 months ago by DBScan ▴ 380
0
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0
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913
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Comment: Comment: Problem with DRAGEN RNAseq hashtable directory
6 months ago by DBScan ▴ 380
0
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2
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913
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Answer: Answer: Problem with DRAGEN RNAseq hashtable directory
6 months ago by DBScan ▴ 380
1
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0
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442
views
Answer: Answer: how to merge two files without duplicating same column
6 months ago by DBScan ▴ 380
1
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1
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912
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Comment: Comment: GIAB Benchmarking
6 months ago by DBScan ▴ 380
0
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1
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728
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Comment: Comment: Calculating number of SNPs in linkage disequilibrium at different thresholds fro
6 months ago by DBScan ▴ 380
0
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0
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560
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Comment: Comment: GATK version check failed
6 months ago by DBScan ▴ 380
1
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0
replies
1.3k
views
Comment: Comment: Problem in installing 'magick' R package
8 months ago by DBScan ▴ 380
2
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1
reply
993
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Answer: Answer: Snakemake alignment script
10 months ago by DBScan ▴ 380
0
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0
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718
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Comment: Comment: Saving the output of LD pruning from SNPRelate package as a new GDS file
10 months ago by DBScan ▴ 380
0
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0
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597
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Answer: Answer: VCF QUAL field for multiple samples
10 months ago by DBScan ▴ 380
1
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2
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1.4k
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Comment: Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
11 months ago by DBScan ▴ 380
1
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1
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1.4k
views
Comment: Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
11 months ago by DBScan ▴ 380
0
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1
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804
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Answer: Answer: BWA-mem2 vs Bowtie2: no deterministic option
11 months ago by DBScan ▴ 380
3
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1
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1.4k
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Answer: Answer: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
11 months ago by DBScan ▴ 380
0
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0
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854
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Answer: Answer: vcf file
11 months ago by DBScan ▴ 380
0
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0
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1.8k
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Answer: Answer: The result of Illumina/hap.py using the same file.
11 months ago by DBScan ▴ 380
1
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1
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1.6k
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Answer: Answer: How to liftover SNP positions from one genome to another genome?
12 months ago by DBScan ▴ 380
0
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1
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863
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Comment: Comment: bcftools view to failed reader data
12 months ago by DBScan ▴ 380
2
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1
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863
views
Answer: Answer: bcftools view to failed reader data
12 months ago by DBScan ▴ 380
1
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1
reply
3.7k
views
Comment: Comment: Conda/Mamba environment activation error
12 months ago by DBScan ▴ 380
81 results • Page 1 of 2
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