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5.0k
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Answer: Answer: bcftools query add header
13 days ago by DBScan ▴ 480
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1
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633
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Comment: Comment: DRAGEN FILTER
27 days ago by DBScan ▴ 480
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349
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Comment: Comment: Using Principal Components may muddle the detecting power of a GWAS?
5 weeks ago by DBScan ▴ 480
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1
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445
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Comment: Comment: Snakemake Global Environment Container
6 weeks ago by DBScan ▴ 480
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1
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445
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Comment: Comment: Snakemake Global Environment Container
6 weeks ago by DBScan ▴ 480
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1
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244
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Fast querying of variant metrics with database
python database
updated 12 weeks ago by 166k • written 12 weeks ago by ▴ 480
2
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0
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554
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Answer: Answer: Snakemake version 8.27.1 on LSF cluster
3 months ago by DBScan ▴ 480
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0
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624
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Comment: Comment: Giraffe DeepVariant workflow
6 months ago by DBScan ▴ 480
2
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2
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624
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Giraffe DeepVariant workflow
deepvariant vg giraffe
updated 6 months ago by 102k • written 6 months ago by ▴ 480
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1
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668
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Comment: Comment: bcftools/vt split multiallelics - split GT along with splitting multi-allelics
7 months ago by DBScan ▴ 480
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1
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2.1k
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Answer: Answer: RNA-Seq mutation calling without germline data
7 months ago by DBScan ▴ 480
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0
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667
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Answer: Answer: Removing conda environment created in a snakemake workflow
7 months ago by DBScan ▴ 480
2
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0
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1.0k
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Answer: Answer: Ancestry estimation using 1000 genomes as reference
8 months ago by DBScan ▴ 480
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1.1k
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Answer: Answer: are illumina fastq files typically split by lane?
9 months ago by DBScan ▴ 480
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1
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793
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Comment: Comment: How to fix this error while performing QC in PLINK "Warning: 228 het. haploid g
9 months ago by DBScan ▴ 480
3
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1
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1.0k
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Answer: Answer: Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DR
10 months ago by DBScan ▴ 480
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0
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610
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Answer: Answer: batchtools_slurm job setting with seurat
10 months ago by DBScan ▴ 480
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0
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1.7k
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Answer: Answer: looking for 1000g hg38 reference data to anchor with my genomic data to plot th
10 months ago by DBScan ▴ 480
2
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3
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726
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Snakemake rule to copy files
snakemake
updated 10 months ago by ▴ 530 • written 10 months ago by ▴ 480
2
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0
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726
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Answer: Answer: Snakemake rule to copy files
10 months ago by DBScan ▴ 480
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1
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617
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Answer: Answer: Add tags/ header lines to a vcf file
11 months ago by DBScan ▴ 480
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1
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1.3k
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
11 months ago by DBScan ▴ 480
2
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1
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1.3k
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
11 months ago by DBScan ▴ 480
1
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1
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1.3k
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Comment: Comment: How to get the ratio of allele counts from GATK derived VCF file?
12 months ago by DBScan ▴ 480
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0
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581
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Comment: Comment: DRAGEN gVCF files and joint calling GATK-GenomicsDB
12 months ago by DBScan ▴ 480
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0
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1.9k
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Comment: Comment: Why are the basics so complicated? Basic coverage filtering for VCF files
13 months ago by DBScan ▴ 480
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0
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1.8k
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Comment: Comment: t-test in two groups, multiple rows
14 months ago by DBScan ▴ 480
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0
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1.8k
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Answer: Answer: gnomAD4.0 Hail Table Downloading
14 months ago by DBScan ▴ 480
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0
replies
1.0k
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Comment: Comment: HLA genotyping of whole genome sequencing data
15 months ago by DBScan ▴ 480
3
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1
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3.8k
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Answer: Answer: Nextflow and self-made pipelines opinion
15 months ago by DBScan ▴ 480
1
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0
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971
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Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
15 months ago by DBScan ▴ 480
0
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1
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971
views
Comment: Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
15 months ago by DBScan ▴ 480
0
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1
reply
2.9k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
15 months ago by DBScan ▴ 480
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1
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2.9k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
15 months ago by DBScan ▴ 480
0
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1
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1.2k
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Answer: Answer: how to extract variants from the vcf.gz files linked below?
15 months ago by DBScan ▴ 480
0
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1
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563
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Comment: Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
15 months ago by DBScan ▴ 480
0
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0
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1.2k
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
15 months ago by DBScan ▴ 480
0
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1
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1.2k
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
15 months ago by DBScan ▴ 480
0
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1
reply
1.2k
views
Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
15 months ago by DBScan ▴ 480
0
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0
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1.9k
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Comment: Comment: difference betwween hail and plink
15 months ago by DBScan ▴ 480
1
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1
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977
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Answer: Answer: What is the best GWAS tool to use for a very large cohort data (UK Biobank data)
15 months ago by DBScan ▴ 480
0
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1
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1.6k
views
Comment: Comment: PCA plot interpretation (single population)
15 months ago by DBScan ▴ 480
0
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1
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1.5k
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Answer: Answer: fill-from-fasta doesnt fill missing values in REF
16 months ago by DBScan ▴ 480
0
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0
replies
1.3k
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Comment: Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
16 months ago by DBScan ▴ 480
1
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1
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1.1k
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Answer: Answer: Suggestions for a simpler solution for collecting snakemake rule output in a tex
16 months ago by DBScan ▴ 480
0
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0
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1.7k
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Comment: Comment: Problem with DRAGEN RNAseq hashtable directory
16 months ago by DBScan ▴ 480
0
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2
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1.7k
views
Answer: Answer: Problem with DRAGEN RNAseq hashtable directory
16 months ago by DBScan ▴ 480
1
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0
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776
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Answer: Answer: how to merge two files without duplicating same column
16 months ago by DBScan ▴ 480
1
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1
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1.6k
views
Comment: Comment: GIAB Benchmarking
16 months ago by DBScan ▴ 480
0
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1
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1.0k
views
Comment: Comment: Calculating number of SNPs in linkage disequilibrium at different thresholds fro
16 months ago by DBScan ▴ 480
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