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Comment:
Comment: t-test in two groups, multiple rows
14 days ago by
DBScan
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698
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Answer:
Answer: gnomAD4.0 Hail Table Downloading
15 days ago by
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353
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Comment:
Comment: HLA genotyping of whole genome sequencing data
4 weeks ago by
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834
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Answer:
Answer: Nextflow and self-made pipelines opinion
4 weeks ago by
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281
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Comment:
Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
4 weeks ago by
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281
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Comment:
Comment: CNV benchmarking: Truvari & HG002 SVs v0.6 (GIAB)
4 weeks ago by
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698
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Comment:
Comment: jellyfish installed in conda, but 'command not found' when I try to run it
5 weeks ago by
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698
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Comment:
Comment: jellyfish installed in conda, but 'command not found' when I try to run it
5 weeks ago by
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383
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Answer:
Answer: how to extract variants from the vcf.gz files linked below?
5 weeks ago by
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229
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Comment:
Comment: Snakemake Wildcard Issue: Trouble Passing Config Field to Rule Input
6 weeks ago by
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421
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Comment:
Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
6 weeks ago by
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421
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Comment:
Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
6 weeks ago by
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421
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Comment:
Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
7 weeks ago by
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574
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Comment:
Comment: difference betwween hail and plink
7 weeks ago by
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1
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1
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348
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Answer:
Answer: What is the best GWAS tool to use for a very large cohort data (UK Biobank data)
7 weeks ago by
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528
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Comment:
Comment: PCA plot interpretation (single population)
8 weeks ago by
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521
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Answer:
Answer: fill-from-fasta doesnt fill missing values in REF
9 weeks ago by
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428
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Comment:
Comment: Normal number of variants to lose during liftover: GRCh38 to hg19
9 weeks ago by
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1
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1
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502
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Answer:
Answer: Suggestions for a simpler solution for collecting snakemake rule output in a tex
9 weeks ago by
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0
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611
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Comment:
Comment: Problem with DRAGEN RNAseq hashtable directory
9 weeks ago by
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0
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2
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611
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Answer:
Answer: Problem with DRAGEN RNAseq hashtable directory
9 weeks ago by
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1
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0
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318
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Answer:
Answer: how to merge two files without duplicating same column
10 weeks ago by
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628
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Comment:
Comment: GIAB Benchmarking
10 weeks ago by
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588
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Comment:
Comment: Calculating number of SNPs in linkage disequilibrium at different thresholds fro
11 weeks ago by
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357
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Comment:
Comment: GATK version check failed
12 weeks ago by
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753
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Comment:
Comment: Problem in installing 'magick' R package
4 months ago by
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2
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796
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Answer:
Answer: Snakemake alignment script
6 months ago by
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537
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Comment:
Comment: Saving the output of LD pruning from SNPRelate package as a new GDS file
6 months ago by
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0
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472
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Answer:
Answer: VCF QUAL field for multiple samples
6 months ago by
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2
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1.1k
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Comment:
Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
7 months ago by
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1.1k
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Comment:
Comment: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
7 months ago by
DBScan
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0
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1
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665
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Answer:
Answer: BWA-mem2 vs Bowtie2: no deterministic option
7 months ago by
DBScan
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3
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1
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1.1k
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Answer:
Answer: T2T fixed GRCg38 gaps and issues, gaps genomic coordinates.
7 months ago by
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0
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702
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Answer:
Answer: vcf file
7 months ago by
DBScan
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1.6k
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Answer:
Answer: The result of Illumina/hap.py using the same file.
7 months ago by
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1.2k
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Answer:
Answer: How to liftover SNP positions from one genome to another genome?
8 months ago by
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0
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1
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694
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Comment:
Comment: bcftools view to failed reader data
8 months ago by
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2
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1
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694
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Answer:
Answer: bcftools view to failed reader data
8 months ago by
DBScan
▴ 300
1
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1
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2.7k
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Comment:
Comment: Conda/Mamba environment activation error
8 months ago by
DBScan
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2
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1
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2.7k
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Answer:
Answer: Conda/Mamba environment activation error
8 months ago by
DBScan
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0
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0
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1.0k
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Answer:
Answer: Rstudio server in Snakemake
8 months ago by
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0
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1.0k
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Comment:
Comment: Qualimap multi-bamqc input file
8 months ago by
DBScan
▴ 300
1
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1
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1.0k
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Comment:
Comment: Qualimap multi-bamqc input file
8 months ago by
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0
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1
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652
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Comment:
Comment: whole genome sequencing and assembly
8 months ago by
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0
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1
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652
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Comment:
Comment: whole genome sequencing and assembly
8 months ago by
DBScan
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0
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1
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667
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Comment:
Comment: Deepvariant and input CRAM files
8 months ago by
DBScan
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0
votes
0
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469
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Answer:
Answer: BWA MEM -K option
8 months ago by
DBScan
▴ 300
0
votes
1
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626
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Answer:
Answer: strelka variant calling
8 months ago by
DBScan
▴ 300
0
votes
1
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718
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Comment:
Comment: Launched: Genozip 15 with co-compression of BAM and FASTQ
9 months ago by
DBScan
▴ 300
2
votes
0
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2.0k
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Answer:
Answer: KING kinship inference error
10 months ago by
DBScan
▴ 300
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