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Answer: Answer: PDB residue serial inconsistency and PDB id&UniProt ID mismatch
13 months ago by Jiyao Wang ▴ 380
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1.4k
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Answer: Answer: Physical Protein size
updated 14 months ago by 150k • written 14 months ago by ▴ 380
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947
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Answer: Answer: Aminoacids range of protein domains in PDB structures
15 months ago by Jiyao Wang ▴ 380
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1.0k
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Answer: Answer: Mapping Mutations, Protein Domains, Exon structure on a Protein Figure/Visualiza
17 months ago by Jiyao Wang ▴ 380
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2
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2.3k
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Answer: Answer: Map genome positions onto protein coordinates?
18 months ago by Jiyao Wang ▴ 380
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2.0k
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Answer: Answer: Search RCSB with a list of protein names?
18 months ago by Jiyao Wang ▴ 380
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3.5k
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Answer: Answer: How do I install DSSP?
19 months ago by Jiyao Wang ▴ 380
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1.7k
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Answer: Answer: NCBI Gene Table Bulk Download
19 months ago by Jiyao Wang ▴ 380
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1.0k
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Answer: Answer: Batch coloring co-folded proteins and outputting PNG
21 months ago by Jiyao Wang ▴ 380
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3.8k
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Answer: Answer: How Study Aromatic-Aromatic Interactions And Amino-Aromatic Interactions Of Prot
21 months ago by Jiyao Wang ▴ 380
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4.8k
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Answer: Answer: Generate Image Of Pdb File From Script Or Command Line
21 months ago by Jiyao Wang ▴ 380
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1.4k
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Answer: Answer: NCBI refseq ids to uniprot ids
23 months ago by Jiyao Wang ▴ 380
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2.5k
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Answer: Answer: How Does Structure Viewer recognize Second Structure Element?
2.2 years ago by Jiyao Wang ▴ 380
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7.9k
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Answer: Answer: How To Calculate Rasa Of Proteins By Residue?
2.2 years ago by Jiyao Wang ▴ 380
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5.3k
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Answer: Answer: 2D structure of a custom protein (not in any databases) from a PDB file.
2.2 years ago by Jiyao Wang ▴ 380
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750
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Answer: Answer: Tool for helix-helix interaction in protein
2.4 years ago by Jiyao Wang ▴ 380
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0
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2.7k
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Answer: Answer: AlphaFold 2 alternatives
2.4 years ago by Jiyao Wang ▴ 380
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3.1k
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Answer: Answer: Where does BioPython store information related to various chemical molecules?
2.4 years ago by Jiyao Wang ▴ 380
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651
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Answer: Answer: Can the information regarding atomic bonds be interpreted only from atom lines i
2.4 years ago by Jiyao Wang ▴ 380
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1
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5.8k
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Answer: Answer: Mapping PDB ID + chain ID to UniProt ID
2.5 years ago by Jiyao Wang ▴ 380
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2.5k
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Answer: Answer: evaluating the effect of mutation in binding affinity of two proteins
2.6 years ago by Jiyao Wang ▴ 380
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1.1k
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Answer: Answer: Calculating classical bioinformatics features from protein sequences
2.8 years ago by Jiyao Wang ▴ 380
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3.2k
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Answer: Answer: Generating thumbnail previews automatically from PDB files
2.9 years ago by Jiyao Wang ▴ 380
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2.4k
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Answer: Answer: How to get a pdb of the second chain of a homodimer using VMD?
3.0 years ago by Jiyao Wang ▴ 380
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3.7k
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Answer: Answer: Is there any easy way to get ASA/RSA for the whole PDB?
3.0 years ago by Jiyao Wang ▴ 380
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741
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Answer: Answer: bulk mapping of aa residue to protein structural features
3.0 years ago by Jiyao Wang ▴ 380
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3.4k
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Answer: Answer: What to do with a bunch of AlphaFold2 structures?
3.1 years ago by Jiyao Wang ▴ 380
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0
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3.4k
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Answer: Answer: What to do with a bunch of AlphaFold2 structures?
3.1 years ago by Jiyao Wang ▴ 380
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0
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708
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Answer: Answer: Chimera- How to go about changing the threshold of the EM map?
3.2 years ago by Jiyao Wang ▴ 380
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3.3k
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Answer: Answer: model pdb to secondary structure?
3.3 years ago by Jiyao Wang ▴ 380
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3.3k
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Answer: Answer: model pdb to secondary structure?
3.3 years ago by Jiyao Wang ▴ 380
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924
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Answer: Answer: is there a 3D protein structure format on amino acid level?
3.4 years ago by Jiyao Wang ▴ 380
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3.0k
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Answer: Answer: solvent accebility in PDBID
3.4 years ago by Jiyao Wang ▴ 380
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0
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2.9k
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Answer: Answer: Proteins bound to more than one ligand
3.4 years ago by Jiyao Wang ▴ 380
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1
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2.1k
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Answer: Answer: Is it possible to isolate and merge overlapping hits from a BLAST search Aligned
3.6 years ago by Jiyao Wang ▴ 380
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0
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4.3k
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Answer: Answer: Precomputed secondary structure prediction from sequence
3.6 years ago by Jiyao Wang ▴ 380
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1
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2.0k
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Answer: Answer: Getting cDNA sequence from NCBI
3.6 years ago by Jiyao Wang ▴ 380
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1
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3.4k
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Answer: Answer: What to do with a bunch of AlphaFold2 structures?
3.6 years ago by Jiyao Wang ▴ 380
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0
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1.0k
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Answer: Answer: Search PDB-format files for residue contacts
3.7 years ago by Jiyao Wang ▴ 380
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1
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2.3k
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Answer: Answer: How to get the name of a protein by knowing only the RefSeq accession number?
3.8 years ago by Jiyao Wang ▴ 380
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0
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1.2k
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Answer: Answer: How to extract amino acids from receptor-ligand complex pdb?
3.8 years ago by Jiyao Wang ▴ 380
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0
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1.7k
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Answer: Answer: Finding Binding Site Residues
3.8 years ago by Jiyao Wang ▴ 380
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1
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1.1k
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Answer: Answer: How to obtain all PDB IDs containing similar binding sites with a specific liga
3.9 years ago by Jiyao Wang ▴ 380
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0
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4.0k
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Answer: A: Drawing Dssp File
4.4 years ago by Jiyao Wang ▴ 380
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0
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1.4k
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Answer: A: View SNPs of SARS-Cov-2 structures in iCn3D viewer and Jupyter Notebook
4.4 years ago by Jiyao Wang ▴ 380
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3.7k
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Answer: A: Any free tool for Calculating Gasteiger-Hückel charges for ligands?
4.5 years ago by Jiyao Wang ▴ 380
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