User: bioinforupesh2009.au

Reputation:
110
Status:
New User
Location:
Spain
Last seen:
4 years, 1 month ago
Joined:
6 years, 9 months ago
Email:
b*******************@gmail.com

about me

Posts by bioinforupesh2009.au

<prev • 69 results • page 1 of 7 • next >
0
votes
0
answers
2.2k
views
0
answers
Comment: C: how to avoid if R packages are installed but not loaded ??
... latticeGrob, its not a package. the real package is ggbio. ...
written 4.1 years ago by bioinforupesh2009.au110
0
votes
0
answers
2.2k
views
0
answers
Comment: C: how to avoid if R packages are installed but not loaded ??
... leave it, its done. I made it by myself. Thank you by the way ...
written 4.1 years ago by bioinforupesh2009.au110 • updated 17 days ago by RamRS25k
0
votes
0
answers
2.2k
views
0
answers
Comment: C: how to avoid if R packages are installed but not loaded ??
... Thank you but I need this solution. what I asked. its my pipeline script. 1. by the way I try to install ggbio package but its also failed while installing. 2. I identified that package and tried to install but its depend on another package "RcppArmadillo" and asked to update, I did. but while upda ...
written 4.1 years ago by bioinforupesh2009.au110 • updated 17 days ago by RamRS25k
2
votes
0
answers
2.2k
views
0
answers
how to avoid if R packages are installed but not loaded ??
...   112 Dear folks, I am wondering how to stop my further script if required packages are not loaded properly ?? Somehow packages are installed but while loading its failed and gives error. However, my script run further but its fail when he found function of that unloaded package. I felt, becasue ...
R bioconductor written 4.1 years ago by bioinforupesh2009.au110 • updated 4.1 years ago by dschika290
0
votes
0
answers
1.0k
views
0
answers
Tool/Packages for integrated DE expression analysis of Time course miRAN and mRNA ?
...   961 Hello guys, I need any tool or R bioconductor packages for integrated DE expression analysis of miRAN and mRNA of time course data. I have time course (4 time points with replicates[unfortunate not equally replicates from one time point to another]) expression matrix (transformed and norma ...
mrna R microarray mirna written 4.3 years ago by bioinforupesh2009.au110
0
votes
1
answer
2.7k
views
1
answers
Comment: C: Time Course analysis packages for RNAseq counts data ?
... Thank you Devon for your kind reply.....I know that edgeR and DESEq2 are also dealing with time series but I would like to have similar packages like maSigPro as this packages shows profiling of each differential expressed gene across all the all time points. ...
written 4.9 years ago by bioinforupesh2009.au110
2
votes
1
answer
2.7k
views
1
answer
(Closed) Time Course analysis packages for RNAseq counts data ?
... Dear all, I just wondering if there is any packages for differential expression analysis of Time course RNAseq counts data ?? I used Next msSigPro but i would like to compare results of this with some other packages. Thank you ...
R rna-seq differential expression written 4.9 years ago by bioinforupesh2009.au110 • updated 4.9 years ago by Devon Ryan93k
0
votes
1
answer
2.4k
views
1
answer
Sizefactors of DESeq2 and edgeR ??? Not equal while using normalization method = RLE of edgeR.
... Dear all, I try to compare normalization by edgeR (method=rle) and DESeq2. I assumed it should be equal but its not. Why ?? Any comment ?? ## DESeq # Estimate size factor dds <- estimateSizeFactors(dds) sizeFactors<-sizeFactors(dds) > sizeFactors        c1        c2             c3       ...
next-gen de rna-seq written 5.0 years ago by bioinforupesh2009.au110 • updated 2.4 years ago by elie.maza0
0
votes
1
answer
2.3k
views
1
answers
Comment: C: Where to download all mouse ncRNA regions in GFF/GTF? was: Rfam 12 gff/gtf ?
... Indeed NO. But I would say, i can get annotation from ensemble ( http://www.ensembl.org/info/data/ftp/index.html ) or from USCS Table but i really need annotation from Rfam version 12.0 (the newest released version). this is what i need. ...
written 5.1 years ago by bioinforupesh2009.au110
0
votes
1
answer
2.3k
views
1
answers
Comment: C: Rfam 12 gff/gtf ?
... Mouse (mmu). is my organism. I need gff to quantify the counts from my mapped sam/bam files. Thanks Michael for your kind help ...
written 5.1 years ago by bioinforupesh2009.au110

Latest awards to bioinforupesh2009.au

Popular Question 4.2 years ago, created a question with more than 1,000 views. For htseq-counts output merge into one matrix ??
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Mirna And Deseq
Popular Question 4.8 years ago, created a question with more than 1,000 views. For htseq-counts output merge into one matrix ??
Popular Question 5.1 years ago, created a question with more than 1,000 views. For Mirna And Deseq

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1460 users visited in the last hour