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17
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htseq-counts output merge into one matrix ??
rna-seq
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
2
replies
10k
views
Answer: A: Makeblastdb Error
updated 5.8 years ago by 45k • written 11.4 years ago by ▴ 150
0
votes
1
reply
4.9k
views
Comment: C: how to avoid if R packages are installed but not loaded ??
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 150
0
votes
1
reply
4.9k
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Comment: C: how to avoid if R packages are installed but not loaded ??
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 150
8
votes
11
replies
13k
views
DESEq2 warning while using GLM fitting
next-gen DESeq2 RNA-Seq R
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
1
reply
4.2k
views
Sizefactors of DESeq2 and edgeR ??? Not equal while using normalization method = RLE of edgeR.
next-gen DE RNA-Seq
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
2
replies
2.4k
views
Bowtie --Col-Keepends Option
bowtie mapping
updated 9.4 years ago by 20 • written 11.8 years ago by ▴ 150
0
votes
8
replies
6.8k
views
miRNA annotation from miRBase 21
miRBase gene-annotation next-gen
updated 2.7 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
1
reply
4.9k
views
Comment: C: how to avoid if R packages are installed but not loaded ??
10.0 years ago by bioinforupesh2009.au ▴ 150
2
votes
7
replies
4.9k
views
how to avoid if R packages are installed but not loaded ??
R bioconductor
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 150
0
votes
0
replies
2.9k
views
validation of novel DE miRNA predicted by mirdeep2
miRDeep2 next-gen RNA-Seq miRNA PCR
updated 4.1 years ago by 45k • written 11.5 years ago by ▴ 150
0
votes
0
replies
1.7k
views
Tool/Packages for integrated DE expression analysis of Time course miRAN and mRNA ?
mRNA R miRNA microarray
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 150
0
votes
1
reply
3.5k
views
Next maSigPro time course packages input problems ??
gene-expression RNA-Seq R biocounductor
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
2
votes
1
reply
4.5k
views
comparing each time point with deseq2 and their results
Gene-expression RNA-Seq R
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 150
1
vote
8
replies
5.0k
views
How to download / Prepare Rfam 12 gff/gtf/bed (an annotation file) ?
gene RNA dataset Assembly
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
1
reply
5.0k
views
Comment: C: Where to download all mouse ncRNA regions in GFF/GTF? was: Rfam 12 gff/gtf ?
11.0 years ago by bioinforupesh2009.au ▴ 150
0
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1
reply
5.0k
views
Comment: C: Rfam 12 gff/gtf ?
11.0 years ago by bioinforupesh2009.au ▴ 150
0
votes
1
reply
5.0k
views
Comment: C: Rfam 12 gff/gtf ?
11.0 years ago by bioinforupesh2009.au ▴ 150
0
votes
1
reply
13k
views
Comment: Comment: DESEq2 warning while using GLM fitting
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
1
reply
13k
views
Comment: Comment: DESEq2 warning while using GLM fitting
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
1
reply
13k
views
Comment: C: DESEq2 warning while using GLM fitting
11.0 years ago by bioinforupesh2009.au ▴ 150
0
votes
1
reply
13k
views
Comment: Comment: DESEq2 warning while using GLM fitting
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
2
replies
13k
views
Comment: Comment: DESEq2 warning while using GLM fitting
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
0
replies
8.2k
views
Comment: Comment: Problem is to design model matrix for edgeR
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
2
replies
8.2k
views
Comment: Comment: Problem is to design model matrix for edgeR
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
1
reply
8.2k
views
Comment: Comment: Problem is to design model matrix for edgeR
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
1
reply
8.2k
views
Comment: C: Problem is to design model matrix for edgeR
11.0 years ago by bioinforupesh2009.au ▴ 150
0
votes
1
reply
8.2k
views
Comment: C: Problem is to design model matrix for edgeR
11.0 years ago by bioinforupesh2009.au ▴ 150
0
votes
1
reply
8.2k
views
Comment: Comment: Problem is to design model matrix for edgeR
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
7
votes
17
replies
8.2k
views
Problem is to design model matrix for edgeR
edgeR Differential-expression deseq R RNA-Seq
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
1
reply
8.2k
views
Comment: Comment: Problem is to design model matrix for edgeR
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
0
replies
8.2k
views
Comment: Comment: Problem is to design model matrix for edgeR
updated 3.8 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
0
replies
4.4k
views
Comment: Comment: Filteration of 0 counts in all column of the htseq-count metrics and add pseudo
updated 4.6 years ago by 45k • written 11.0 years ago by ▴ 150
0
votes
1
reply
4.4k
views
Comment: Comment: Filteration of 0 counts in all column of the htseq-count metrics and add pseudo
updated 2.7 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
1
reply
4.4k
views
Comment: Comment: Filteration of 0 counts in all column of the htseq-count metrics and add pseudo
updated 4.6 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
1
reply
4.4k
views
Comment: Comment: Filteration of 0 counts in all column of the htseq-count metrics and add pseudo
updated 4.6 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
1
reply
4.4k
views
Comment: Comment: Filteration of 0 counts in all column of the htseq-count metrics and add pseudo
updated 4.6 years ago by 45k • written 11.1 years ago by ▴ 150
1
vote
11
replies
4.4k
views
Filteration of 0 counts in all column of the htseq-count metrics and add pseudo counts in remaining columns after filteration ??
htseq-counts RNA-seq
updated 2.7 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
0
replies
26k
views
Comment: Comment: htseq-counts output merge into one matrix ??
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
1
reply
26k
views
Comment: Comment: htseq-counts output merge into one matrix ??
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 150
1
vote
0
replies
26k
views
Comment: Comment: htseq-counts output merge into one matrix ??
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
1
reply
26k
views
Comment: Comment: htseq-counts output merge into one matrix ??
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 150
5
votes
3
replies
4.2k
views
Offline Tools or packages (prefer R and bioconductor packeges) for miRNA-seq time series counts data analysis of DE miRNAs ???
next-gen R RNA-Seq miRNA
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 150
1
vote
0
replies
4.2k
views
Comment: Comment: Offline Tools or packages (prefer R and bioconductor packeges) for miRNA-seq tim
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
0
replies
6.8k
views
Comment: Comment: miRNA annotation from miRBase 21
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
1
reply
6.8k
views
Comment: Comment: miRNA annotation from miRBase 21
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
1
reply
6.8k
views
Comment: Comment: miRNA annotation from miRBase 21
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 150
0
votes
0
replies
6.8k
views
Comment: C: miRNA annotation from miRBase 21
11.1 years ago by bioinforupesh2009.au ▴ 150
0
votes
0
replies
15k
views
Comment: Comment: Deseq Vs Edger..Filtering Read Counts.
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 150
0
votes
1
reply
15k
views
Comment: Comment: Deseq Vs Edger..Filtering Read Counts.
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 150
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