Moderator: Stephen

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Stephen2.6k
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Posts by Stephen

<prev • 69 results • page 1 of 7 • next >
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Comment: C: samtools: error while loading shared libraries: libbz2.so.1.0: cannot open share
... Same here. What should the order be in my .condarc? Currently it's: channels: - bioconda - r - defaults - conda-forge Should this be reordered? ...
written 9 weeks ago by Stephen2.6k
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Job: Bioinformatics analyst in University of Virginia Bioinformatics Core
... See the full ad here: http://jobs.virginia.edu/applicants/Central?quickFind=79420 The UVa School of Medicine's Office of Research Core Administration seeks a Bioinformatics Analyst. The analyst will work closely with the core director and other staff to assist in experimental design and provide exp ...
R chip-seq job rna-seq written 17 months ago by Stephen2.6k
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Comment: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
... +1 on sharing the script, @mhockin ...
written 2.2 years ago by Stephen2.6k
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Comment: C: For R workshop, need bio equivalent of 'diamonds' or 'nycflights13' data.
... Thanks, this is helpful. After limiting by multivariate, matrix, mixed data types, at at least 1000 samples, looks like the covertype dataset might be a good candidate. I'll have to look further. Thanks again. ...
written 2.8 years ago by Stephen2.6k
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Forum: For R workshop, need bio equivalent of 'diamonds' or 'nycflights13' data.
... I teach an R workshop at my university thats targeted toward researchers with little background in stats or computing. I'm working on expanding this to create a series that will include [1] an intro to R, [2] an advanced data manipulation workshop (read: dplyr and tidyr), and [3] an advanced data vi ...
R forum dplyr workshop written 2.8 years ago by Stephen2.6k • updated 2.8 years ago by Sean Davis23k
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Forum: Myopenid Shutting Down
... Not sure if this will have any implications for existing Biostar users logging in with MyOpenID. https://news.ycombinator.com/item?id=6328354 Hello, I wanted to reach out personally to let you know that we have made the decision to end of life the myOpenID service. myOpenID will be turne ...
forum written 4.2 years ago by Stephen2.6k • updated 4.2 years ago by Istvan Albert ♦♦ 74k
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Answer: A: What Are Your Most-Used Public Data Repositories?
... I use GEO frequently. dbGaP when I have to - access is painful. ...
written 4.3 years ago by Stephen2.6k
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Comment: C: New Free Community Tutorial Website For Bioinformatics Learning
... Have a look at http://www.biotnet.org/ ...
written 4.3 years ago by Stephen2.6k
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Answer: A: Automating Gorilla And/Or Revigo Analysis
... A local version of their tools would be optimal but Aaron Mackey here has written a script to do this: ...
written 4.6 years ago by Stephen2.6k
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Answer: A: Comparing Peaks Coming From Different Peak Calling Programs
... See ENCODE's Irreproducible Detection Rate and the ENCODE papers that describe it. Via @nextgenseek. ...
written 4.6 years ago by Stephen2.6k

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