User: liux.bio
liux.bio • 340
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Posts by liux.bio
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... Hi, biostars.
I am analyzing an affymetrix microarray [ dataset][1]. After searching, I found following blogs about filtering probes:
- [Question: filtering probes in affymetrix data][2]
- [Question: Filtering before differential expression analysis of microarrays - New paper out][3]
- [Questio ...
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... Many thanks for your clear answer. I will have a try. ...
written 15 months ago by
liux.bio • 340
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... Hi, biostars,
I am using Limma package to analyze a chip-on-chip [data set][1] generated by Mouse PromoterChip 5A.0 arrays. The arrays are two-color Microarray. The protocol the author used are as follows:
> Extracted raw data were filtered and normalized using "normexp" method from the Limma p ...
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... ##Overview##
In a cell, proteins function in different space and time through interacting with different partners. Intuitively visualizing the active PPI subnetworks in specific space or time can help researchers discover key proteins for further study. We developed [PPIExp][1], a web-based platform ...
written 17 months ago by
liux.bio • 340
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... For TFs enrichment analysis, you can try [homer][1]
[1]: http://homer.ucsd.edu/homer/motif/motifDatabase.html ...
written 17 months ago by
liux.bio • 340
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... You can follow the [tutorial][1]
[1]: http://www.fgvis.com/expressvis/tutorial ...
written 17 months ago by
liux.bio • 340
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... Hi,
Biostars. I want to predict the receptors of a ligand. Are there any tools I can use? or any suggestions? ...
written 22 months ago by
liux.bio • 340
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... You can try [iRegulon][1], which is a cytoscape app.
[1]: http://apps.cytoscape.org/apps/iregulon ...
written 2.1 years ago by
liux.bio • 340
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Comment:
C: displaying graphs in R
... You can try [ggplot2][1].
[1]: https://ggplot2.tidyverse.org/ ...
written 2.1 years ago by
liux.bio • 340
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... ## First one ##
For the first question. I agree with you, Js and Django are different. But I think we can learn two techniques at the same time.
## Second one ##
As for combining Django and Angular. I mean that when we develop the app, we use Angular to develop front-end and use Django develop the b ...
written 2.1 years ago by
liux.bio • 340
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For How to filter out the non-coding genes?
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For How To Use Clusgap() When The Cluster Method Is Hierarchical Clustering?
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For How To Determine The Promoter Region When Look For Over-Represented Transcription Factor Binding Sites?
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For How To Use Clusgap() When The Cluster Method Is Hierarchical Clustering?
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created a question with more than 1,000 views.
For Identify Differentially Expressed Genes With Two Groups In Which There Are Only Two Replicates
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For How To Determine The Promoter Region When Look For Over-Represented Transcription Factor Binding Sites?
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For How To Get The Subclusters From The Object Of Hclust() Using Cutree() According To The Order On The Map Produced By Heatmap.2?
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