User: liux.bio

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liux.bio340
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5 years, 11 months ago
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Posts by liux.bio

<prev • 42 results • page 1 of 5 • next >
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Ask for suggestions of filtering probes in affymetrix data
... Hi, biostars. I am analyzing an affymetrix microarray [ dataset][1]. After searching, I found following blogs about filtering probes: - [Question: filtering probes in affymetrix data][2] - [Question: Filtering before differential expression analysis of microarrays - New paper out][3] - [Questio ...
microarray affymetrix written 5 days ago by liux.bio340
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Comment: C: Could not reproduce the results (MA-plot) in the paper when analyzing two-color
... Many thanks for your clear answer. I will have a try. ...
written 5 weeks ago by liux.bio340
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Could not reproduce the results (MA-plot) in the paper when analyzing two-color Microarray data with Limma.
... Hi, biostars, I am using Limma package to analyze a chip-on-chip [data set][1] generated by Mouse PromoterChip 5A.0 arrays. The arrays are two-color Microarray. The protocol the author used are as follows: > Extracted raw data were filtered and normalized using "normexp" method from the Limma p ...
R microarray limma written 5 weeks ago by liux.bio340 • updated 5 weeks ago by ATpoint17k
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Tool: PPIExp: a web-based platform for visualizing dynamic protein-protein interaction networks (active PPI subnetworks )
... ##Overview## In a cell, proteins function in different space and time through interacting with different partners. Intuitively visualizing the active PPI subnetworks in specific space or time can help researchers discover key proteins for further study. We developed [PPIExp][1], a web-based platform ...
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Answer: A: question about TF enrichment analysis
... For TFs enrichment analysis, you can try [homer][1] [1]: http://homer.ucsd.edu/homer/motif/motifDatabase.html ...
written 3 months ago by liux.bio340
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Comment: C: How to map and visualize differentially expressed genes on KEGG pathways
... You can follow the [tutorial][1] [1]: http://www.fgvis.com/expressvis/tutorial ...
written 4 months ago by liux.bio340
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How to predict receptors of a ligand?
... Hi, Biostars. I want to predict the receptors of a ligand. Are there any tools I can use? or any suggestions? ...
receptor prediction written 8 months ago by liux.bio340
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Answer: A: Transcription Factors in common
... You can try [iRegulon][1], which is a cytoscape app. [1]: http://apps.cytoscape.org/apps/iregulon ...
written 11 months ago by liux.bio340
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Comment: C: displaying graphs in R
... You can try [ggplot2][1]. [1]: https://ggplot2.tidyverse.org/ ...
written 11 months ago by liux.bio340
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Comment: C: How to build a bioinformatics server
... ## First one ## For the first question. I agree with you, Js and Django are different. But I think we can learn two techniques at the same time. ## Second one ## As for combining Django and Angular. I mean that when we develop the app, we use Angular to develop front-end and use Django develop the b ...
written 11 months ago by liux.bio340

Latest awards to liux.bio

Popular Question 5 months ago, created a question with more than 1,000 views. For How to filter out the non-coding genes?
Good Answer 11 months ago, created an answer that was upvoted at least 5 times. For A: How to build a bioinformatics server
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How can i do enrichment analysis more precisely for differential expression anal
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: How can i do enrichment analysis more precisely for differential expression anal
Popular Question 2.5 years ago, created a question with more than 1,000 views. For How to filter out the non-coding genes?
Popular Question 3.7 years ago, created a question with more than 1,000 views. For How To Use Clusgap() When The Cluster Method Is Hierarchical Clustering?
Popular Question 3.7 years ago, created a question with more than 1,000 views. For How To Get Tissue-Specific Protein-Protein Interactions?
Popular Question 4.7 years ago, created a question with more than 1,000 views. For How To Use Clusgap() When The Cluster Method Is Hierarchical Clustering?

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