User: liux.bio

gravatar for liux.bio
liux.bio250
Reputation:
250
Status:
Trusted
Location:
China
Last seen:
1 day, 8 hours ago
Joined:
5 years ago
Email:
l*******@gmail.com

Posts by liux.bio

<prev • 35 results • page 1 of 4 • next >
0
votes
2
answers
87
views
2
answers
Answer: A: Transcription Factors in common
... You can try [iRegulon][1], which is a cytoscape app. [1]: http://apps.cytoscape.org/apps/iregulon ...
written 13 days ago by liux.bio250
0
votes
0
answers
115
views
0
answers
Comment: C: displaying graphs in R
... You can try [ggplot2][1]. [1]: https://ggplot2.tidyverse.org/ ...
written 13 days ago by liux.bio250
0
votes
2
answers
293
views
2
answers
Comment: C: How to build a bioinformatics server
... ## First one ## For the first question. I agree with you, Js and Django are different. But I think we can learn two techniques at the same time. ## Second one ## As for combining Django and Angular. I mean that when we develop the app, we use Angular to develop front-end and use Django develop the b ...
written 18 days ago by liux.bio250
11
votes
2
answers
293
views
2
answers
Answer: A: How to build a bioinformatics server
... In the last year, I developed a web server - [ExpressVis][1] - for analyzing and exploring expression profiling data. Here is my experience. ## Overview ## According to your needs, the application should include a back-end (a server) and a front-end. The back-end receives a request from the fron ...
written 18 days ago by liux.bio250
0
votes
2
answers
94
views
2
answers
Answer: A: stringDB PPI network with Log fold change?
... If you just want to color the nodes based on their fold-change in just one experimental group, I think Cytoscape mentioned by [Jean-Karim Heriche][1] can meet your needs. But if you want to color nodes in multiple groups, I recommend you to use [PPIExp][2]. In PPIExp, you can color nodes in multiple ...
written 24 days ago by liux.bio250
3
votes
2
answers
210
views
2
answers
Answer: A: How can i do enrichment analysis more precisely for differential expression anal
... You can try Cytoscape APP [Bingo][1]. It presents the hirarchical relationships of the GO terms. I often use it to find specific enriched GO terms. Additionally, you can try [Revigo][2]. It summarize GO terms by removing redundant terms. It has awesome visualization. If you want to explore enric ...
written 26 days ago by liux.bio250
0
votes
2
answers
3.2k
views
2
answers
Answer: A: How to map and visualize differentially expressed genes on KEGG pathways
... Maybe you could try [KeggExp][1]. Here is a example for highlight differentially-expressed genes: ![enter image description here][2] ---------- For more information about KeggExp, see the post [here][3] ---------- PS: I am the author of KeggExp [1]: http://www.fgvis.com/KeggExp [2]: http ...
written 6 weeks ago by liux.bio250
0
votes
1
answer
2.2k
views
1
answers
Answer: A: Map gene list to pathway and visualize it
... Recently, I developed a web server - KeggExp - for visualizing KEGG pathway maps when analyzing expression profile data. With KeggExp, users can highlight up-expressed genes as red and down-expressed as green. It is available [here][1]. Additionally, I have posted a tool [here][2]. [1]: http:// ...
written 6 weeks ago by liux.bio250
0
votes
0
answers
278
views
0
answers
Comment: C: KeggExp: a web server for visualizing KEGG pathways maps when analyzing expressi
... For the first bug, the browser should be allowed to download multiple files simultaneously. ---------- For the second bug, heatmap is designed to not to show negative value. The expression profile data should be processed data, in which the fold change of one gene between group A and group B co ...
written 6 weeks ago by liux.bio250
2
votes
0
answers
278
views
0
answers
Tool: KeggExp: a web server for visualizing KEGG pathways maps when analyzing expression profile data
... ## Overview ## KeggExp is a biologist-friendly web server to integrate KEGG pathways and expression profile data (data generated by Microarray, RNA-seq, or mass spectrometry). It aims to adopt interactive visualization techniques to help researchers find key kegg pathways or genes that are worth fur ...

Latest awards to liux.bio

Good Answer 18 days ago, created an answer that was upvoted at least 5 times. For A: How to build a bioinformatics server
Teacher 18 days ago, created an answer with at least 3 up-votes. For A: How can i do enrichment analysis more precisely for differential expression anal
Teacher 26 days ago, created an answer with at least 3 up-votes. For A: How can i do enrichment analysis more precisely for differential expression anal
Popular Question 19 months ago, created a question with more than 1,000 views. For How to filter out the non-coding genes?
Popular Question 2.8 years ago, created a question with more than 1,000 views. For How To Use Clusgap() When The Cluster Method Is Hierarchical Clustering?
Popular Question 2.8 years ago, created a question with more than 1,000 views. For How To Get Tissue-Specific Protein-Protein Interactions?
Popular Question 3.8 years ago, created a question with more than 1,000 views. For How To Use Clusgap() When The Cluster Method Is Hierarchical Clustering?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1490 users visited in the last hour