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User: liux.bio

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liux.bio • 280
Reputation:
280
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China
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4 weeks, 1 day ago
Joined:
5 years, 4 months ago
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l*******@gmail.com

Posts by liux.bio

<prev • 36 results • page 1 of 4 • next >
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How to predict receptors of a ligand?
... Hi, Biostars. I want to predict the receptors of a ligand. Are there any tools I can use? or any suggestions? ...
receptor prediction written 29 days ago by liux.bio • 280
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Answer: A: Transcription Factors in common
... You can try [iRegulon][1], which is a cytoscape app. [1]: http://apps.cytoscape.org/apps/iregulon ...
written 4 months ago by liux.bio • 280
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Comment: C: displaying graphs in R
... You can try [ggplot2][1]. [1]: https://ggplot2.tidyverse.org/ ...
written 4 months ago by liux.bio • 280
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Comment: C: How to build a bioinformatics server
... ## First one ## For the first question. I agree with you, Js and Django are different. But I think we can learn two techniques at the same time. ## Second one ## As for combining Django and Angular. I mean that when we develop the app, we use Angular to develop front-end and use Django develop the b ...
written 4 months ago by liux.bio • 280
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Answer: A: How to build a bioinformatics server
... In the last year, I developed a web server - [ExpressVis][2] - for analyzing and exploring expression profiling data. Here is my experience. ## Overview ## According to your needs, the application should include a back-end (a server) and a front-end. The back-end receives a request from the fron ...
written 4 months ago by liux.bio • 280
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Answer: A: stringDB PPI network with Log fold change?
... If you just want to color the nodes based on their fold-change in just one experimental group, I think Cytoscape mentioned by [Jean-Karim Heriche][1] can meet your needs. But if you want to color nodes in multiple groups, I recommend you to use [PPIExp][2]. In PPIExp, you can color nodes in multiple ...
written 4 months ago by liux.bio • 280
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Answer: A: How can i do enrichment analysis more precisely for differential expression anal
... You can try Cytoscape APP [Bingo][1]. It presents the hirarchical relationships of the GO terms. I often use it to find specific enriched GO terms. Additionally, you can try [Revigo][2]. It summarize GO terms by removing redundant terms. It has awesome visualization. If you want to explore enric ...
written 4 months ago by liux.bio • 280
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Answer: A: How to map and visualize differentially expressed genes on KEGG pathways
... Maybe you could try [KeggExp][1]. Here is a example for highlight differentially-expressed genes: ![enter image description here][2] ---------- For more information about KeggExp, see the post [here][3] ---------- PS: I am the author of KeggExp [1]: http://www.fgvis.com/KeggExp [2]: http ...
written 5 months ago by liux.bio • 280
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Answer: A: Map gene list to pathway and visualize it
... Recently, I developed a web server - KeggExp - for visualizing KEGG pathway maps when analyzing expression profile data. With KeggExp, users can highlight up-expressed genes as red and down-expressed as green. It is available [here][1]. Additionally, I have posted a tool [here][2]. [1]: http:// ...
written 5 months ago by liux.bio • 280
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Comment: C: KeggExp: a web server for visualizing KEGG pathways maps when analyzing expressi
... For the first bug, the browser should be allowed to download multiple files simultaneously. ---------- For the second bug, heatmap is designed to not to show negative value. The expression profile data should be processed data, in which the fold change of one gene between group A and group B co ...
written 5 months ago by liux.bio • 280

Latest awards to liux.bio

Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: How to build a bioinformatics server
Appreciated 4 months ago, created a post with more than 5 votes. For How To Get The Subclusters From The Object Of Hclust() Using Cutree() According To The Order On The Map Produced By Heatmap.2?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How can i do enrichment analysis more precisely for differential expression anal
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How can i do enrichment analysis more precisely for differential expression anal
Great Question 10 months ago, created a question with more than 5,000 views. For How To Get The Subclusters From The Object Of Hclust() Using Cutree() According To The Order On The Map Produced By Heatmap.2?
Appreciated 22 months ago, created a post with more than 5 votes. For How To Get The Subclusters From The Object Of Hclust() Using Cutree() According To The Order On The Map Produced By Heatmap.2?
Good Question 22 months ago, asked a question that was upvoted at least 5 times. For How To Get The Subclusters From The Object Of Hclust() Using Cutree() According To The Order On The Map Produced By Heatmap.2?
Popular Question 22 months ago, created a question with more than 1,000 views. For How to filter out the non-coding genes?
Great Question 3.1 years ago, created a question with more than 5,000 views. For How To Get The Subclusters From The Object Of Hclust() Using Cutree() According To The Order On The Map Produced By Heatmap.2?
Epic Question 3.1 years ago, created a question with more than 10,000 views. For How To Get The Subclusters From The Object Of Hclust() Using Cutree() According To The Order On The Map Produced By Heatmap.2?
Popular Question 3.1 years ago, created a question with more than 1,000 views. For How To Use Clusgap() When The Cluster Method Is Hierarchical Clustering?
Popular Question 3.1 years ago, created a question with more than 1,000 views. For How To Get Tissue-Specific Protein-Protein Interactions?
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Identify Differentially Expressed Genes With Two Groups In Which There Are Only Two Replicates
Popular Question 3.1 years ago, created a question with more than 1,000 views. For How To Determine The Promoter Region When Look For Over-Represented Transcription Factor Binding Sites?
Student 3.1 years ago, asked a question with at least 3 up-votes. For How To Get The Subclusters From The Object Of Hclust() Using Cutree() According To The Order On The Map Produced By Heatmap.2?
Popular Question 4.1 years ago, created a question with more than 1,000 views. For How To Use Clusgap() When The Cluster Method Is Hierarchical Clustering?
Popular Question 4.1 years ago, created a question with more than 1,000 views. For Identify Differentially Expressed Genes With Two Groups In Which There Are Only Two Replicates
Popular Question 4.1 years ago, created a question with more than 1,000 views. For How To Determine The Promoter Region When Look For Over-Represented Transcription Factor Binding Sites?
Popular Question 4.2 years ago, created a question with more than 1,000 views. For How To Get The Subclusters From The Object Of Hclust() Using Cutree() According To The Order On The Map Produced By Heatmap.2?
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