User: niutster

gravatar for niutster
niutster60
Reputation:
60
Status:
Trusted
Location:
Last seen:
3 months, 1 week ago
Joined:
4 years, 9 months ago
Email:
n*******@gmail.com

about me

Posts by niutster

<prev • 92 results • page 1 of 10 • next >
0
votes
0
answers
156
views
0
answers
common genes between DMRs and DEGs
... Hi I have found differential methylated regions(DMRs) between two samples, I am interested to confirm methylated genes with the change in their expression , in my experiment the expression of genes are not available, then i have downloaded data with this type of disease from GEO and found differe ...
genes dmrs degs written 3 months ago by niutster60
0
votes
1
answer
211
views
1
answer
How to merge probes with the same gene symbol in soft file?
... Hi all, I have downloaded from GEO one soft file and extracted some specified GSMs . The GSMs soft files were categorized based on probes names but when i mapped probes to genes symbol, i have understand some probes mapped to one gene symbol. How can i merge these probes and have unique gene symbo ...
soft file microarray gene symbol written 4 months ago by niutster60 • updated 4 months ago by mbens100
0
votes
1
answer
443
views
1
answers
Comment: C: How to import both node and edge files into cytoscape from WGCNA?
... I use desktop version on windows. ...
written 4 months ago by niutster60
0
votes
1
answer
556
views
1
answers
Comment: C: How filter genes to construct co-expression network?
... Thanks, Could you explain more about filtering based on low variance ? How can do it? ...
written 4 months ago by niutster60
0
votes
1
answer
556
views
1
answers
Comment: C: How filter genes to construct co-expression network?
... Data normalization and pre- processing was performed , I just want to filter data to reduce the volume of data. ...
written 4 months ago by niutster60
0
votes
0
answers
222
views
0
answers
Which differential corellation ranges is meaningful?
... Hi, I have a list of differential links resulted of differential co-expression network, How can i filter links based on differential value? Which range is meaningful ? ...
differential co-expression corellation written 4 months ago by niutster60
2
votes
1
answer
556
views
5 follow
1
answer
How filter genes to construct co-expression network?
... Hi, I am interested to filter data for constructing co-expression network , Which parameter can i use to filter genes? As i know in WGCNA tutorial, it suggests not to use differential expressed genes(DEG) to filter genes. ...
wgcna deg filtering co-expreesion network written 4 months ago by niutster60 • updated 4 months ago by Kevin Blighe19k
1
vote
1
answer
443
views
1
answer
How to import both node and edge files into cytoscape from WGCNA?
... Hi, I am a little new with cytoscape, I used exportNetworkToCytoscape command in WGCNA to export the network, the commands output cotaining nodes and edges files but in cytoscape ,only one file can be imported. do anybody know how can i import both files into cytoscape? ...
wgcna node file cytoscape edge file written 4 months ago by niutster60 • updated 4 months ago by Kevin Blighe19k
0
votes
0
answers
241
views
0
answers
Minfi probe filtering
... Hi, As we know in 450k data analysis, probes with p-value> 0.01 must be removed but in minfi package it suggests to remove probes with p-value>0.01 in more than 50% of samples, in Champ package it automatically removes probes with p-value>0.01 and in some other analysis remove probes with ...
p-value R tools minfi written 6 months ago by niutster60
0
votes
0
answers
283
views
0
answers
Comment: C: similarity in methylation of two different persons
... I have used minfi package for preprocessing and seqlm to find differentially methylated regions. ...
written 6 months ago by niutster60

Latest awards to niutster

Epic Question 4 months ago, created a question with more than 10,000 views. For Find Cpg Islands
Popular Question 8 months ago, created a question with more than 1,000 views. For Error in installation R package
Popular Question 13 months ago, created a question with more than 1,000 views. For Error in installation R package
Great Question 4.8 years ago, created a question with more than 5,000 views. For Find Cpg Islands
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Find Cpg Islands

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1129 users visited in the last hour