User: SamGG
SamGG • 20
- Reputation:
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- Location:
- France
- Last seen:
- 1 month, 2 weeks ago
- Joined:
- 7 years, 2 months ago
- Email:
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Posts by SamGG
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... Hi,
column PRE + column POST = column ADDITIONAL
So, I am unsure whether it makes sense to compare one PRE or POST column to the margin column.
My two cents. ...
written 3.4 years ago by
SamGG • 20
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... Hi,
I'm not sure I will answer your question. In a first approach, I split the experimental data (gene expression) according the quartiles leading to 3 groups: samples with levels below 25th percentile, higher than 75th percentile and samples in between. From that grouping I get a KM plot and p-val ...
written 3.5 years ago by
SamGG • 20
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... Hi,
I am confused with gene expression data concerning cell lines available from those resources: CCLE, GDSC1000, CTRP.
Are the gene expression available to download at those data portals independent experiments or some integration?
All those data seems to be Affymetrix data. Is there RNAseq data ...
written 3.5 years ago by
SamGG • 20
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... Hi,
I am not an expert, but I have the feeling that you mix fdr and bootstrap. May be those articles could help you with FDR.
http://www.nature.com/nmeth/journal/v11/n4/full/nmeth.2900.html
http://www.nature.com/nbt/journal/v27/n12/full/nbt1209-1135.html
Best. ...
written 3.9 years ago by
SamGG • 20
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... Hi, I am trying to validate some genes using RNAseq levels. I am facing the same questions and feel confused. I am used to work with samples obtained at the diagnosis. But a lot of samples of the SKCM dataset are obtained at a date later than the diagnosis. As stated above, the range is huge.
Rachel ...
written 3.9 years ago by
SamGG • 20
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Comment:
A: Extract genes from gene list
... Please, do provide a list of ten gene identifiers. It could help ;-) ...
written 3.9 years ago by
SamGG • 20
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6 follow
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... Hi,
I would like to represent the linkage (or correlation) of some data (let say genes) with Cytoscape. So I would like a way to transform a distance (or so) into a network (one-to-one links). Distance filtering is certainly needed in order to avoid a dense and ugly network graphics.
a/ is there a ...
written 7.2 years ago by
SamGG • 20
• updated
20 months ago by
Kevin Blighe ♦ 67k
Latest awards to SamGG
Great Question
23 months ago,
created a question with more than 5,000 views.
For From Distance Matrix To Network
Popular Question
23 months ago,
created a question with more than 1,000 views.
For gene expression from CCLE, GDSC, CTRP: independent repeats or data merge?
Popular Question
7.2 years ago,
created a question with more than 1,000 views.
For From Distance Matrix To Network
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