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Comment: Comment: RNAseq edgeR :considering interaction is needed?
12 days ago by SamGG ▴ 150
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Comment: Comment: DESeq2 design for differential expression with 2 timepoints and 2 controls
12 weeks ago by SamGG ▴ 150
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
4 months ago by SamGG ▴ 150
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1.7k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
4 months ago by SamGG ▴ 150
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Comment: Comment: Design matrix with uneven patient representation across stages
4 months ago by SamGG ▴ 150
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Answer: Answer: Heatmap of a transformed deseq object with pheatmap
4 months ago by SamGG ▴ 150
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Comment: Comment: Limma model gives weird results
4 months ago by SamGG ▴ 150
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480
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edgeR questions for use with cytometry counts
edgeR cytometry diffcyt
7 months ago by SamGG ▴ 150
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718
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Comment: Comment: Removing confounding batch effects
8 months ago by SamGG ▴ 150
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Answer: Answer: Adding p value above plot
8 months ago by SamGG ▴ 150
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Comment: Comment: Contrasts for comparing condition within tissue
10 months ago by SamGG ▴ 150
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Answer: Answer: Contrasts for comparing condition within tissue
10 months ago by SamGG ▴ 150
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Comment: Comment: removeBatchEffect explained using base R linear models
10 months ago by SamGG ▴ 150
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2.7k
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Comment: Comment: removeBatchEffect explained using base R linear models
10 months ago by SamGG ▴ 150
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832
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Comment: Comment: Dealing with outliers for differential expression in proteomics
10 months ago by SamGG ▴ 150
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Comment: Comment: Help in Log2 transform CPM count
updated 13 months ago by 45k • written 13 months ago by ▴ 150
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2.5k
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Comment: Comment: Help in Log2 transform CPM count
13 months ago by SamGG ▴ 150
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5.0k
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Comment: Comment: Error with pheatmap - 'from' must be a finite number
16 months ago by SamGG ▴ 150
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14k
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From Distance Matrix To Network
distance network cytoscape
updated 6.5 years ago by 89k • written 12.1 years ago by ▴ 150
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1.6k
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Comment: C: Enrichment analysis for class comparison
8.2 years ago by SamGG ▴ 150
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14k
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Answer: A: determining cutoff for Kaplan Meier
8.3 years ago by SamGG ▴ 150
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2.4k
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gene expression from CCLE, GDSC, CTRP: independent repeats or data merge?
ccle gdsc1000 cancer cell lines
8.3 years ago by SamGG ▴ 150
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Comment: C: How to correctly calculate Storey-Tibshriani FDR Q Values using R Package "QValu
8.7 years ago by SamGG ▴ 150
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Comment: C: TCGA clinical data: stage of tumor at time biopsy was taken
8.7 years ago by SamGG ▴ 150
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3.1k
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Comment: A: Extract genes from gene list
8.7 years ago by SamGG ▴ 150
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