User: MAPK

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MAPK1.3k
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Posts by MAPK

<prev • 451 results • page 1 of 46 • next >
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Comment: C: Why do R1 and R2 compressed files have different size
... As you know I had this problem last time with the SRA file where two files were asymetric. I just wanted to submit the compressed file this time. Yes the `wc -l` indicates same number for both files ...
written 7 days ago by MAPK1.3k
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Comment: A: Why do R1 and R2 compressed files have different size
... Thanks! I was submitting these pairs to NCBI sra and wanted to make sure this won't cause any problem. ...
written 7 days ago by MAPK1.3k
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Why do R1 and R2 compressed files have different size
... I have a transcriptome data of 10.8gb R1.fastq and R2.fastq each. I then compressed these pairs using `gzip R1.fastq` and `gzip R2.fast2`, and now the files are 2.2gb and 2.4gb. Is it possible for two compressed files to have different size when the uncompressed files are of same size? ...
fastq gzip written 7 days ago by MAPK1.3k • updated 7 days ago by dariober9.4k
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Contig assembly in different genomes of the same species
... Hi All, I was using PRICE tool (http://derisilab.ucsf.edu/software/price/) to assemble a contig with a seed sequence( ~200bp) in genomes of the same species. I was able to extend the seed sequence in one genome up to 3600 bp, but could not extend it from other genomes of the same species. This conti ...
assembly written 9 days ago by MAPK1.3k
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Comment: C: How can I submit paired-end SRA data to NCBI?
... Thanks, I will give it a try. ...
written 12 days ago by MAPK1.3k
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Comment: C: How can I submit paired-end SRA data to NCBI?
... Sorry still confused- should I submit as one compressed file (with both R1 and R2) or two individually compressed files? ...
written 12 days ago by MAPK1.3k
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Comment: C: How can I submit paired-end SRA data to NCBI?
... That's right, these are raw data. I have emailed SRA support to reset it. So when I re-upload the files, should I just compress both files and submit as one compressed file? ...
written 13 days ago by MAPK1.3k
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Comment: C: How can I submit paired-end SRA data to NCBI?
... What does that mean? Could you please clarify? ...
written 13 days ago by MAPK1.3k
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Comment: C: How can I submit paired-end SRA data to NCBI?
... Thanks. So when I submit it again, should I just compress both R1 and R2 and make one compressed file and submit? ...
written 13 days ago by MAPK1.3k
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Comment: C: How can I submit paired-end SRA data to NCBI?
... And what's the procedure to remove/update already submitted files? Is it possible to remove them and resubmit? ...
written 13 days ago by MAPK1.3k

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