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12
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11
replies
4.4k
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Combine two VCF files with GATK4
GATK
updated 9 months ago by 39k • written 2.4 years ago by ★ 2.0k
0
votes
1
reply
1.6k
views
GATK tool to merge INDEL with SNPs with the same set of samples
VCF GATK
updated 2.3 years ago by 20 • written 2.4 years ago by ★ 2.0k
0
votes
1
reply
2.1k
views
Comment: C: Split plink files from multiallelic to biallelic
2.3 years ago by MAPK ★ 2.0k
1
vote
4
replies
2.1k
views
Split plink files from multiallelic to biallelic
Plink
updated 24 months ago by • 0 • written 2.3 years ago by ★ 2.0k
3
votes
4
replies
3.4k
views
How to remove chr from VCF file
VCF
updated 2.3 years ago by ▴ 770 • written 2.3 years ago by ★ 2.0k
0
votes
0
replies
3.4k
views
Comment: C: How to remove chr from VCF file
2.3 years ago by MAPK ★ 2.0k
1
vote
1
reply
545
views
Working with multi-biallelic rows of VCF in plink
plink vcf gatk
2.3 years ago by MAPK ★ 2.0k
0
votes
0
replies
1.3k
views
Comment: C: Plink error with reading phenotype file
2.4 years ago by MAPK ★ 2.0k
3
votes
2
replies
1.3k
views
Plink error with reading phenotype file
plink
updated 2.4 years ago by 10k • written 2.4 years ago by ★ 2.0k
0
votes
1
reply
847
views
Calculating Allele Balance in GATK4
GATK
updated 19 months ago by • 0 • written 2.4 years ago by ★ 2.0k
0
votes
0
replies
4.4k
views
Comment: C: Combine two VCF files with GATK4
2.4 years ago by MAPK ★ 2.0k
0
votes
1
reply
4.4k
views
Comment: C: Combine two VCF files with GATK4
2.4 years ago by MAPK ★ 2.0k
0
votes
2
replies
4.4k
views
Comment: C: Combine two VCF files with GATK4
2.4 years ago by MAPK ★ 2.0k
0
votes
0
replies
1.5k
views
MergeVcfs vs GatherVCFs in GATK 4
gatk
2.4 years ago by MAPK ★ 2.0k
0
votes
0
replies
34k
views
Comment: C: Extract subset of samples from multigenome vcf file
2.4 years ago by MAPK ★ 2.0k
0
votes
0
replies
682
views
Comment: C: BWA aligner error: paired reads have different names
2.4 years ago by MAPK ★ 2.0k
1
vote
2
replies
682
views
BWA aligner error: paired reads have different names
bwa
2.4 years ago by MAPK ★ 2.0k
14
votes
12
replies
4.8k
views
Adapter trimming of small RNAseq data
smallRNAseq RNA-Seq adapter trimming
updated 2.5 years ago by 20 • written 4.9 years ago by ★ 2.0k
2
votes
1
reply
892
views
How to add prefix to samtools collate
samtools
updated 2.6 years ago by 72k • written 2.6 years ago by ★ 2.0k
2
votes
8
replies
2.0k
views
How to select values based on specific condition from the matrix in R
R
updated 5 months ago by 39k • written 8.0 years ago by ★ 2.0k
5
votes
1
reply
4.3k
views
Comment: C: PhD in Bioinformatics: to continue, or not to continue? That is the question--
2.6 years ago by MAPK ★ 2.0k
0
votes
0
replies
1.5k
views
Answer: A: Split paired end fastq per lane from a bam file
2.6 years ago by MAPK ★ 2.0k
11
votes
14
replies
1.5k
views
Split paired end fastq per lane from a bam file
fastq bam
2.6 years ago by MAPK ★ 2.0k
0
votes
0
replies
1.5k
views
Comment: C: Split paired end fastq per lane from a bam file
2.6 years ago by MAPK ★ 2.0k
0
votes
0
replies
4.2k
views
Comment: C: How to assign read groups to bam files?
2.6 years ago by MAPK ★ 2.0k
0
votes
1
reply
4.2k
views
Comment: C: How to assign read groups to bam files?
2.6 years ago by MAPK ★ 2.0k
0
votes
1
reply
1.5k
views
Comment: C: Split paired end fastq per lane from a bam file
2.6 years ago by MAPK ★ 2.0k
0
votes
1
reply
1.5k
views
Comment: C: Split paired end fastq per lane from a bam file
updated 2.6 years ago by 72k • written 2.6 years ago by ★ 2.0k
0
votes
1
reply
1.5k
views
Comment: C: Split paired end fastq per lane from a bam file
2.6 years ago by MAPK ★ 2.0k
0
votes
1
reply
677
views
Picard's AddOrReplaceReadGroups gives invalid argument error
picard addreplacereadgroups
updated 2.6 years ago by ▴ 220 • written 2.6 years ago by ★ 2.0k
0
votes
1
reply
4.2k
views
Comment: C: How to assign read groups to bam files?
2.6 years ago by MAPK ★ 2.0k
4
votes
22
replies
4.2k
views
How to assign read groups to bam files?
BAM
2.6 years ago by MAPK ★ 2.0k
0
votes
1
reply
4.2k
views
Comment: C: How to assign read groups to bam files?
2.6 years ago by MAPK ★ 2.0k
0
votes
1
reply
4.2k
views
Comment: C: How to assign read groups to bam files?
2.6 years ago by MAPK ★ 2.0k
0
votes
0
replies
2.7k
views
Trinity-v2.5.1 assembly generating bowtie 2 error
rnaseq trinity
updated 2.6 years ago by 20 • written 5.6 years ago by ★ 2.0k
4
votes
2
replies
968
views
BWA alignment generating errors
BWA alignment
2.6 years ago by MAPK ★ 2.0k
0
votes
2
replies
1.1k
views
Extract SRA reads per RG using fasterq-dump
SRA fasterq-dump dbGAP
2.6 years ago by MAPK ★ 2.0k
0
votes
0
replies
1.1k
views
Comment: C: Extract SRA reads per RG using fasterq-dump
2.6 years ago by MAPK ★ 2.0k
0
votes
0
replies
1.9k
views
Answer: C: Suggestions on Labtop Mac for Bioinformatics
2.7 years ago by MAPK ★ 2.0k
0
votes
0
replies
4.2k
views
Comment: C: How to assign read groups to bam files?
2.7 years ago by MAPK ★ 2.0k
0
votes
1
reply
4.2k
views
Comment: C: How to assign read groups to bam files?
2.7 years ago by MAPK ★ 2.0k
0
votes
0
replies
4.2k
views
Comment: C: How to assign read groups to bam files?
2.7 years ago by MAPK ★ 2.0k
0
votes
1
reply
4.2k
views
Comment: C: How to assign read groups to bam files?
2.7 years ago by MAPK ★ 2.0k
0
votes
2
replies
4.2k
views
Comment: C: How to assign read groups to bam files?
2.7 years ago by MAPK ★ 2.0k
0
votes
1
reply
4.2k
views
Comment: C: How to assign read groups to bam files?
2.7 years ago by MAPK ★ 2.0k
0
votes
0
replies
1.4k
views
Comment: C: Revert bam to fastq
2.7 years ago by MAPK ★ 2.0k
0
votes
2
replies
1.4k
views
Comment: C: Revert bam to fastq
2.7 years ago by MAPK ★ 2.0k
4
votes
9
replies
1.4k
views
Revert bam to fastq
sam bam
updated 2.7 years ago by 34k • written 2.7 years ago by ★ 2.0k
0
votes
1
reply
1.4k
views
Comment: C: Revert bam to fastq
2.7 years ago by MAPK ★ 2.0k
0
votes
0
replies
2.0k
views
Comment: C: Extract bed regions from CRAM files
2.7 years ago by MAPK ★ 2.0k
560 results • Page 1 of 12
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