User: lsp03yjh
lsp03yjh • 760
- Reputation:
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- China
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- Joined:
- 5 years, 11 months ago
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about me
Posts by lsp03yjh
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... You can download all data using the web API ( http://starbase.sysu.edu.cn/tutorialAPI.php ) ...
written 11 months ago by
lsp03yjh • 760
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... Thanks for your appraisal of our platform. In fact, we provide more details in our website. You can click the web-links to get detail information such as biological source, high-throughput methods, transcript regions, read numbers. In addition, we provide the aligned regions (base-pairs), minimum f ...
written 11 months ago by
lsp03yjh • 760
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... You may use [lncRNA-target interactions][1] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) and small [ncRNA-target interactions][2] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=sncRNA ) supported by LIGR, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data ...
written 11 months ago by
lsp03yjh • 760
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Answer:
A: Target gene of LncRNA
... You may use **[lncRNA-target interactiome][1]** ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) supported by LIGR, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data.
[1]: http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ...
written 11 months ago by
lsp03yjh • 760
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... You may use **[lncRNA-target interactions**][1] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) supported by LIGR-Seq, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data.
[1]: http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ...
written 11 months ago by
lsp03yjh • 760
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... We constructs **[a global-scale landscape of RNA-RNA interactions][1]** involving various classes of ncRNAs (lncRNAs, snoRNAs, tRNAs, snRNAs, pseudogenes and miRNAs) and mRNAs by re-analyzing high-throughput RNA interactome data from **SPLASH, MARIO, PARIS and LIGR-seq methods.** We using stringent ...
written 11 months ago by
lsp03yjh • 760
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... cBio portal may use different version of RNA-seq data. I think it is OK for your project. You also can fetch the newest expression values from TCGA GDC website https://portal.gdc.cancer.gov/. ...
written 12 months ago by
lsp03yjh • 760
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... You can use **[Pan-Cancer Analysis Platform][1]** http://starbase.sysu.edu.cn/panCancer.php . It provided expression profiles of ncRNAs (miRNAs, lncRNAs, snoRNAs, pseudogenes, etc.) and protein-coding genes across 32 cancer types ( ~10,000 RNA-seq and ~9,900 miRNA-seq samples) integrated from **TCGA ...
written 12 months ago by
lsp03yjh • 760
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... Thanks for your information. The link is http://starbase.sysu.edu.cn/download.php. We have modified it. ...
written 14 months ago by
lsp03yjh • 760
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... Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking **(CLIP-Seq)** provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions.
starBase v3.0 CLIP-seq database provides **more than 700 CLIP-seq data fr ...
written 14 months ago by
lsp03yjh • 760
Latest awards to lsp03yjh
Popular Question
11 weeks ago,
created a question with more than 1,000 views.
For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
Popular Question
6 months ago,
created a question with more than 1,000 views.
For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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9 months ago,
created a post with more than 5 votes.
For Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Popular Question
11 months ago,
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For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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For Transcription Factor Binding Sites, Motifs and Profiles from ~10200 ChIP-seq and TCGA Pan-Cancer data
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20 months ago,
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For deepBase: Identification, Expression, Evolution and Function of lncRNAs, circRNAs, sRNAs from deep-sequencing data
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For deepBase: Identification, Expression, Evolution and Function of lncRNAs, circRNAs, sRNAs from deep-sequencing data
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For Pan-Cancer Analysis And Networks Of LncRNAs, MiRNAs, circRNAs, CeRNAs And RNA-Binding Proteins From TCGA 14 Cancer Types and CLIP-seq data
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For deepBase: Identification, Expression, Evolution and Function of lncRNAs, circRNAs, sRNAs from deep-sequencing data
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2.4 years ago,
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For Discovering protein-lncRNA interactions from large-scale CLIP-Seq and TCGA Cancer datasets
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2.8 years ago,
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For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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2.9 years ago,
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For Discovering protein-lncRNA interactions from large-scale CLIP-Seq and TCGA Cancer datasets
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3.2 years ago,
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For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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For Pan-Cancer Analysis And Networks Of LncRNAs, MiRNAs, CeRNAs And RNA-Binding Proteins From TCGA 14 Cancer Types
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For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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3.4 years ago,
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For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
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3.6 years ago,
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For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
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For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
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4.3 years ago,
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For Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Proteins(Rbps) From 14 Cancer Types
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For Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Proteins(Rbps) From 14 Cancer Types
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5.8 years ago,
created a post with more than 5 votes.
For Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Proteins(Rbps) From 14 Cancer Types
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