User: lsp03yjh
lsp03yjh • 710
- Reputation:
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- China
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- https://scholar.google...
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- Last seen:
- 18 hours ago
- Joined:
- 5 years ago
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about me
Posts by lsp03yjh
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... Thanks for your appraisal of our platform. In fact, we provide more details in our website. You can click the web-links to get detail information such as biological source, high-throughput methods, transcript regions, read numbers. In addition, we provide the aligned regions (base-pairs), minimum f ...
written 1 day ago by
lsp03yjh • 710
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... You may use [lncRNA-target interactions][1] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) and small [ncRNA-target interactions][2] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=sncRNA ) supported by LIGR, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data ...
written 11 days ago by
lsp03yjh • 710
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Answer:
A: Target gene of LncRNA
... You may use **[lncRNA-target interactiome][1]** ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) supported by LIGR, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data.
[1]: http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ...
written 13 days ago by
lsp03yjh • 710
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... You may use **[lncRNA-target interactions**][1] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) supported by LIGR-Seq, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data.
[1]: http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ...
written 13 days ago by
lsp03yjh • 710
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... We constructs **[a global-scale landscape of RNA-RNA interactions][1]** involving various classes of ncRNAs (lncRNAs, snoRNAs, tRNAs, snRNAs, pseudogenes and miRNAs) and mRNAs by re-analyzing high-throughput RNA interactome data from **SPLASH, MARIO, PARIS and LIGR-seq methods.** We using stringent ...
written 16 days ago by
lsp03yjh • 710
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... cBio portal may use different version of RNA-seq data. I think it is OK for your project. You also can fetch the newest expression values from TCGA GDC website https://portal.gdc.cancer.gov/. ...
written 5 weeks ago by
lsp03yjh • 710
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... You can use **[Pan-Cancer Analysis Platform][1]** http://starbase.sysu.edu.cn/panCancer.php . It provided expression profiles of ncRNAs (miRNAs, lncRNAs, snoRNAs, pseudogenes, etc.) and protein-coding genes across 32 cancer types ( ~10,000 RNA-seq and ~9,900 miRNA-seq samples) integrated from **TCGA ...
written 5 weeks ago by
lsp03yjh • 710
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... Thanks for your information. The link is http://starbase.sysu.edu.cn/download.php. We have modified it. ...
written 12 weeks ago by
lsp03yjh • 710
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... Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking **(CLIP-Seq)** provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions.
starBase v3.0 CLIP-seq database provides **more than 700 CLIP-seq data fr ...
written 12 weeks ago by
lsp03yjh • 710
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5 follow
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... Circular RNAs (circRNAs) represent an abundant group of noncoding RNAs in eukaryotes and are emerging as important regulatory molecules in physiological and pathological processes. However, the precise mechanisms and functions of most of circRNAs remain largely unknown.
We developed three stand-al ...
written 7 months ago by
lsp03yjh • 710
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8 months ago,
created a post with more than 5 votes.
For Transcription Factor Binding Sites, Motifs and Profiles from ~10200 ChIP-seq and TCGA Pan-Cancer data
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9 months ago,
created a question with more than 1,000 views.
For deepBase: Identification, Expression, Evolution and Function of lncRNAs, circRNAs, sRNAs from deep-sequencing data
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For deepBase: Identification, Expression, Evolution and Function of lncRNAs, circRNAs, sRNAs from deep-sequencing data
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created a question with more than 10,000 views.
For Pan-Cancer Analysis And Networks Of LncRNAs, MiRNAs, circRNAs, CeRNAs And RNA-Binding Proteins From TCGA 14 Cancer Types and CLIP-seq data
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For deepBase: Identification, Expression, Evolution and Function of lncRNAs, circRNAs, sRNAs from deep-sequencing data
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For Discovering protein-lncRNA interactions from large-scale CLIP-Seq and TCGA Cancer datasets
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23 months ago,
created a question with more than 1,000 views.
For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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For Discovering protein-lncRNA interactions from large-scale CLIP-Seq and TCGA Cancer datasets
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For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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For Pan-Cancer Analysis And Networks Of LncRNAs, MiRNAs, CeRNAs And RNA-Binding Proteins From TCGA 14 Cancer Types
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For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
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For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
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For Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Proteins(Rbps) From 14 Cancer Types
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For Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Proteins(Rbps) From 14 Cancer Types
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For Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Proteins(Rbps) From 14 Cancer Types
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