User: lsp03yjh
lsp03yjh • 580
- Reputation:
- 580
- Status:
- Trusted
- Location:
- China
- Website:
- http://starbase.sysu.e...
- Scholar ID:
- Google Scholar Page
- Last seen:
- 21 hours ago
- Joined:
- 4 years, 10 months ago
- Email:
- l*******@gmail.com
about me
Posts by lsp03yjh
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... Thanks for your information. The link is http://starbase.sysu.edu.cn/download.php. We have modified it. ...
written 27 days ago by
lsp03yjh • 580
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... Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking **(CLIP-Seq)** provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions.
starBase v3.0 CLIP-seq database provides **more than 700 CLIP-seq data fr ...
written 29 days ago by
lsp03yjh • 580
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5 follow
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... Circular RNAs (circRNAs) represent an abundant group of noncoding RNAs in eukaryotes and are emerging as important regulatory molecules in physiological and pathological processes. However, the precise mechanisms and functions of most of circRNAs remain largely unknown.
We developed three stand-al ...
written 5 months ago by
lsp03yjh • 580
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... **RNA-binding proteins (RBPs)** regulate the expression of thousands of transcripts, and some are reported to be involved in human tumorigenesis.
We conducted comprehensive analyses for **expression, somatic copy number alteration (SCNA), and mutation profiles** of **1,542 RBPs in ∼7,000 clinical ...
written 8 months ago by
lsp03yjh • 580
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... You can use **[starBase][1]** to discover lncRNA-miRNA and lncRNA-RBP interactions.
[1]: http://starbase.sysu.edu.cn/ ...
written 13 months ago by
lsp03yjh • 580
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... We have developed **[RMBase v2.0][1]** to decode the map of RNA modifications (>100 different modification types) , as well as their relationships with microRNA binding events, disease-related SNPs or variations and RNA-binding proteins (RBP).
RMBase v2.0 was expanded with **~1402760 modificati ...
written 14 months ago by
lsp03yjh • 580
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... **The spatial and temporal transcriptional landscape** of long non-coding RNAs (lncRNAs,) during human brain development remains poorly understood.
Here, we developed a method for the genome-wide lncRNA transcriptional analysis in an extensive series of **1340 post-mortem human brain specimens col ...
written 15 months ago by
lsp03yjh • 580
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... RMBase v2.0 has been developed, RMBase v2.0 is freely available at [http://rna.sysu.edu.cn/rmbase/][1]
[1]: http://rna.sysu.edu.cn/rmbase/index.php ...
written 15 months ago by
lsp03yjh • 580
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Answer:
A: miRNA Target database?
... You can try the [**starBase**][1] (http://starbase.sysu.edu.cn/) database, it has been updated to decode **miRNA-mRNA, miRNA-lncRNA,** miRNA-sncRNA, miRNA-circRNA, miRNA-pseudogene, protein-lncRNA inteactions from **CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data**.
starB ...
written 20 months ago by
lsp03yjh • 580
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... You can downloaded **all expression values of lncRNAs** and protein-coding genes generated by TCGA RNA-seq datasets from **[oncoNcRNA download][1]** page.
[1]: http://rna.sysu.edu.cn/onconcrna/download.php ...
written 20 months ago by
lsp03yjh • 580
Latest awards to lsp03yjh
Appreciated
6 months ago,
created a post with more than 5 votes.
For Transcription Factor Binding Sites, Motifs and Profiles from ~10200 ChIP-seq and TCGA Pan-Cancer data
Popular Question
7 months ago,
created a question with more than 1,000 views.
For deepBase: Identification, Expression, Evolution and Function of lncRNAs, circRNAs, sRNAs from deep-sequencing data
Popular Question
7 months ago,
created a question with more than 1,000 views.
For deepBase: Identification, Expression, Evolution and Function of lncRNAs, circRNAs, sRNAs from deep-sequencing data
Epic Question
12 months ago,
created a question with more than 10,000 views.
For Pan-Cancer Analysis And Networks Of LncRNAs, MiRNAs, circRNAs, CeRNAs And RNA-Binding Proteins From TCGA 14 Cancer Types and CLIP-seq data
Popular Question
12 months ago,
created a question with more than 1,000 views.
For deepBase: Identification, Expression, Evolution and Function of lncRNAs, circRNAs, sRNAs from deep-sequencing data
Appreciated
16 months ago,
created a post with more than 5 votes.
For Discovering protein-lncRNA interactions from large-scale CLIP-Seq and TCGA Cancer datasets
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21 months ago,
created a question with more than 1,000 views.
For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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21 months ago,
created a post with more than 5 votes.
For Discovering protein-lncRNA interactions from large-scale CLIP-Seq and TCGA Cancer datasets
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2.2 years ago,
created a question with more than 1,000 views.
For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
Appreciated
2.2 years ago,
created a post with more than 5 votes.
For Pan-Cancer Analysis And Networks Of LncRNAs, MiRNAs, CeRNAs And RNA-Binding Proteins From TCGA 14 Cancer Types
Popular Question
2.2 years ago,
created a question with more than 1,000 views.
For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
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2.3 years ago,
created an answer with at least 3 up-votes.
For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
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2.5 years ago,
created a question with more than 1,000 views.
For StarScan: scanning small RNA targets in lncRNA, circRNA, mRNA and pseudo genes from degradome sequencing data
Scholar
2.9 years ago,
created an answer that has been accepted.
For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
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2.9 years ago,
created an answer with at least 3 up-votes.
For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
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3.3 years ago,
created a question with more than 5,000 views.
For Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Proteins(Rbps) From 14 Cancer Types
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created a question with more than 1,000 views.
For Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Proteins(Rbps) From 14 Cancer Types
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4.7 years ago,
created a post with more than 5 votes.
For Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Proteins(Rbps) From 14 Cancer Types
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