User: lsp03yjh

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lsp03yjh710
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China
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https://scholar.google...
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Last seen:
18 hours ago
Joined:
5 years ago
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l*******@gmail.com

about me

Posts by lsp03yjh

<prev • 55 results • page 1 of 6 • next >
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Comment: C: Deciphering LncRNA-Target, NcRNA-Target, Pseudogene-Target and mRNA-Target Inter
... Thanks for your appraisal of our platform. In fact, we provide more details in our website. You can click the web-links to get detail information such as biological source, high-throughput methods, transcript regions, read numbers. In addition, we provide the aligned regions (base-pairs), minimum f ...
written 1 day ago by lsp03yjh710
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Answer: A: non-coding RNAs target predictions
... You may use [lncRNA-target interactions][1] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) and small [ncRNA-target interactions][2] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=sncRNA ) supported by LIGR, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data ...
written 11 days ago by lsp03yjh710
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Answer: A: Target gene of LncRNA
... You may use **[lncRNA-target interactiome][1]** ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) supported by LIGR, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data. [1]: http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ...
written 13 days ago by lsp03yjh710
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Answer: A: lncRNA-mRNA binding prediction database?
... You may use **[lncRNA-target interactions**][1] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) supported by LIGR-Seq, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data. [1]: http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ...
written 13 days ago by lsp03yjh710
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Tool: Deciphering LncRNA-Target, NcRNA-Target, Pseudogene-Target and mRNA-Target Interactions from RNA Interactome Sequencing Data
... We constructs **[a global-scale landscape of RNA-RNA interactions][1]** involving various classes of ncRNAs (lncRNAs, snoRNAs, tRNAs, snRNAs, pseudogenes and miRNAs) and mRNAs by re-analyzing high-throughput RNA interactome data from **SPLASH, MARIO, PARIS and LIGR-seq methods.** We using stringent ...
lncrna interactions rna interactome starbase tool written 16 days ago by lsp03yjh710
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Comment: C: Finding gene expression from TCGA pan cancer
... cBio portal may use different version of RNA-seq data. I think it is OK for your project. You also can fetch the newest expression values from TCGA GDC website https://portal.gdc.cancer.gov/. ...
written 5 weeks ago by lsp03yjh710
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Answer: A: Finding gene expression from TCGA pan cancer
... You can use **[Pan-Cancer Analysis Platform][1]** http://starbase.sysu.edu.cn/panCancer.php . It provided expression profiles of ncRNAs (miRNAs, lncRNAs, snoRNAs, pseudogenes, etc.) and protein-coding genes across 32 cancer types ( ~10,000 RNA-seq and ~9,900 miRNA-seq samples) integrated from **TCGA ...
written 5 weeks ago by lsp03yjh710
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Comment: C: CLIP-seq database contains PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEA
... Thanks for your information. The link is http://starbase.sysu.edu.cn/download.php. We have modified it. ...
written 12 weeks ago by lsp03yjh710
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Tool: RNA Motifs and CLIP-seq database from PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP and uvCLIP
... Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking **(CLIP-Seq)** provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions. starBase v3.0 CLIP-seq database provides **more than 700 CLIP-seq data fr ...
clip tool eclip hits-clip par-clip iclip written 12 weeks ago by lsp03yjh710
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Tool: CircTools: Softwares for Discovering circRNA-microRNA Interactions from CLIP-Seq Datasets
... Circular RNAs (circRNAs) represent an abundant group of noncoding RNAs in eukaryotes and are emerging as important regulatory molecules in physiological and pathological processes. However, the precise mechanisms and functions of most of circRNAs remain largely unknown. We developed three stand-al ...
circrna microrna interactome rna-seq clip-seq tool written 7 months ago by lsp03yjh710

Latest awards to lsp03yjh

Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
Scholar 3.1 years ago, created an answer that has been accepted. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot

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