User: lsp03yjh

gravatar for lsp03yjh
lsp03yjh550
Reputation:
550
Status:
Trusted
Location:
China
Website:
http://starbase.sysu.e...
Scholar ID:
Google Scholar Page
Last seen:
1 day, 5 hours ago
Joined:
4 years, 7 months ago
Email:
l*******@gmail.com

about me

Posts by lsp03yjh

<prev • 46 results • page 1 of 5 • next >
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Tool: CircTools: Softwares for Discovering circRNA-microRNA Interactions from CLIP-Seq Datasets
... Circular RNAs (circRNAs) represent an abundant group of noncoding RNAs in eukaryotes and are emerging as important regulatory molecules in physiological and pathological processes. However, the precise mechanisms and functions of most of circRNAs remain largely unknown. We developed three stand-al ...
circrna microrna interactome rna-seq clip-seq tool written 11 weeks ago by lsp03yjh550
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News: Pan-Cancer analysis of RNA Binding Proteins in ~7000 tumor samples
... **RNA-binding proteins (RBPs)** regulate the expression of thousands of transcripts, and some are reported to be involved in human tumorigenesis. We conducted comprehensive analyses for **expression, somatic copy number alteration (SCNA), and mutation profiles** of **1,542 RBPs in ∼7,000 clinical ...
news tcga pan-cancer rna-seq rna modification rbp written 6 months ago by lsp03yjh550
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Answer: A: How to find target genes of long non coding RNA
... You can use **[starBase][1]** to discover lncRNA-miRNA and lncRNA-RBP interactions. [1]: http://starbase.sysu.edu.cn/ ...
written 10 months ago by lsp03yjh550
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Tool: Decode the Map of RNA Modifications from Epitranscriptome Sequencing Data
... We have developed **[RMBase v2.0][1]** to decode the map of RNA modifications (>100 different modification types) , as well as their relationships with microRNA binding events, disease-related SNPs or variations and RNA-binding proteins (RBP). RMBase v2.0 was expanded with **~1402760 modificati ...
tool snp m5c m1a pseudouridine m6a written 11 months ago by lsp03yjh550
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News: Spatio-temporal Transcriptome of LncRNAs in Human Brain
... **The spatial and temporal transcriptional landscape** of long non-coding RNAs (lncRNAs,) during human brain development remains poorly understood. Here, we developed a method for the genome-wide lncRNA transcriptional analysis in an extensive series of **1340 post-mortem human brain specimens col ...
parkinson alzheimer news brain transcriptome lncrna written 12 months ago by lsp03yjh550
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Answer: A: RNA Modification Database and The Landscape of RNA Modifications
... RMBase v2.0 has been developed, RMBase v2.0 is freely available at [http://rna.sysu.edu.cn/rmbase/][1] [1]: http://rna.sysu.edu.cn/rmbase/index.php ...
written 12 months ago by lsp03yjh550
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Answer: A: miRNA Target database?
... You can try the [**starBase**][1] (http://starbase.sysu.edu.cn/) database, it has been updated to decode **miRNA-mRNA, miRNA-lncRNA,** miRNA-sncRNA, miRNA-circRNA, miRNA-pseudogene, protein-lncRNA inteactions from **CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data**. starB ...
written 17 months ago by lsp03yjh550
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Answer: A: Where can i download the lncRNA expression profile for Lung adenocarcinoma
... You can downloaded **all expression values of lncRNAs** and protein-coding genes generated by TCGA RNA-seq datasets from **[oncoNcRNA download][1]** page. [1]: http://rna.sysu.edu.cn/onconcrna/download.php ...
written 17 months ago by lsp03yjh550
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Tool: oncoNcRNA: Exploring the lncRNAs and miRNAs with Oncogenic Potentials from TCGA and CCLE cancer samples
... We had released **[oncoNcRNA][1]**, a web portal for explore the ncRNAs (lncRNAs, miRNAs, piRNAs, snoRNAs, tRNAs) with oncogenic potentials in **64 human cancer types(>20000 tumor samples and >800 cancer cell lines)**. It is a valuable tool for investigating the function and clinical relevance ...
tool cancer tcga ccle mirna lncrna written 17 months ago by lsp03yjh550 • updated 6 months ago by Wendy0
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Comment: C: Transcription Factor Binding Sites, Motifs, Profiles and Targets from ~10200 ChI
... Thank you. We are testing network, some regions can visit it, as you said that it might be firewall issues. ...
written 19 months ago by lsp03yjh550

Latest awards to lsp03yjh

Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
Scholar 2.7 years ago, created an answer that has been accepted. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot

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