User: lsp03yjh

gravatar for lsp03yjh
lsp03yjh580
Reputation:
580
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Trusted
Location:
China
Website:
http://starbase.sysu.e...
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Google Scholar Page
Last seen:
21 hours ago
Joined:
4 years, 10 months ago
Email:
l*******@gmail.com

about me

Posts by lsp03yjh

<prev • 48 results • page 1 of 5 • next >
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Comment: C: CLIP-seq database contains PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEA
... Thanks for your information. The link is http://starbase.sysu.edu.cn/download.php. We have modified it. ...
written 27 days ago by lsp03yjh580
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Tool: CLIP-seq database contains PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP and uvCLIP
... Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking **(CLIP-Seq)** provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions. starBase v3.0 CLIP-seq database provides **more than 700 CLIP-seq data fr ...
clip tool eclip hits-clip par-clip iclip written 29 days ago by lsp03yjh580
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Tool: CircTools: Softwares for Discovering circRNA-microRNA Interactions from CLIP-Seq Datasets
... Circular RNAs (circRNAs) represent an abundant group of noncoding RNAs in eukaryotes and are emerging as important regulatory molecules in physiological and pathological processes. However, the precise mechanisms and functions of most of circRNAs remain largely unknown. We developed three stand-al ...
circrna microrna interactome rna-seq clip-seq tool written 5 months ago by lsp03yjh580
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News: Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
... **RNA-binding proteins (RBPs)** regulate the expression of thousands of transcripts, and some are reported to be involved in human tumorigenesis. We conducted comprehensive analyses for **expression, somatic copy number alteration (SCNA), and mutation profiles** of **1,542 RBPs in ∼7,000 clinical ...
cancer driver rna-seq news tcga pan-cancer mutations written 8 months ago by lsp03yjh580
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Answer: A: How to find target genes of long non coding RNA
... You can use **[starBase][1]** to discover lncRNA-miRNA and lncRNA-RBP interactions. [1]: http://starbase.sysu.edu.cn/ ...
written 13 months ago by lsp03yjh580
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Tool: Decode the Map of RNA Modifications from Epitranscriptome Sequencing Data
... We have developed **[RMBase v2.0][1]** to decode the map of RNA modifications (>100 different modification types) , as well as their relationships with microRNA binding events, disease-related SNPs or variations and RNA-binding proteins (RBP). RMBase v2.0 was expanded with **~1402760 modificati ...
tool snp m5c m1a pseudouridine m6a written 14 months ago by lsp03yjh580
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News: Spatio-temporal Transcriptome of LncRNAs in Human Brain
... **The spatial and temporal transcriptional landscape** of long non-coding RNAs (lncRNAs,) during human brain development remains poorly understood. Here, we developed a method for the genome-wide lncRNA transcriptional analysis in an extensive series of **1340 post-mortem human brain specimens col ...
parkinson alzheimer news brain transcriptome lncrna written 15 months ago by lsp03yjh580
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Answer: A: RNA Modification Database and The Landscape of RNA Modifications
... RMBase v2.0 has been developed, RMBase v2.0 is freely available at [http://rna.sysu.edu.cn/rmbase/][1] [1]: http://rna.sysu.edu.cn/rmbase/index.php ...
written 15 months ago by lsp03yjh580
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Answer: A: miRNA Target database?
... You can try the [**starBase**][1] (http://starbase.sysu.edu.cn/) database, it has been updated to decode **miRNA-mRNA, miRNA-lncRNA,** miRNA-sncRNA, miRNA-circRNA, miRNA-pseudogene, protein-lncRNA inteactions from **CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data**. starB ...
written 20 months ago by lsp03yjh580
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Answer: A: Where can i download the lncRNA expression profile for Lung adenocarcinoma
... You can downloaded **all expression values of lncRNAs** and protein-coding genes generated by TCGA RNA-seq datasets from **[oncoNcRNA download][1]** page. [1]: http://rna.sysu.edu.cn/onconcrna/download.php ...
written 20 months ago by lsp03yjh580

Latest awards to lsp03yjh

Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
Scholar 2.9 years ago, created an answer that has been accepted. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
Teacher 2.9 years ago, created an answer with at least 3 up-votes. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot

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