User: lsp03yjh

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lsp03yjh760
Reputation:
760
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Location:
China
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https://scholar.google...
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Google Scholar Page
Last seen:
2 months ago
Joined:
5 years, 11 months ago
Email:
l*******@gmail.com

about me

Posts by lsp03yjh

<prev • 56 results • page 1 of 6 • next >
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Comment: C: RNA Motifs and CLIP-seq database from PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP,
... You can download all data using the web API ( http://starbase.sysu.edu.cn/tutorialAPI.php ) ...
written 11 months ago by lsp03yjh760
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Comment: C: Deciphering LncRNA-Target, NcRNA-Target, Pseudogene-Target and mRNA-Target Inter
... Thanks for your appraisal of our platform. In fact, we provide more details in our website. You can click the web-links to get detail information such as biological source, high-throughput methods, transcript regions, read numbers. In addition, we provide the aligned regions (base-pairs), minimum f ...
written 11 months ago by lsp03yjh760
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Answer: A: non-coding RNAs target predictions
... You may use [lncRNA-target interactions][1] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) and small [ncRNA-target interactions][2] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=sncRNA ) supported by LIGR, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data ...
written 11 months ago by lsp03yjh760
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Answer: A: Target gene of LncRNA
... You may use **[lncRNA-target interactiome][1]** ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) supported by LIGR, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data. [1]: http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ...
written 11 months ago by lsp03yjh760
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Answer: A: lncRNA-mRNA binding prediction database?
... You may use **[lncRNA-target interactions**][1] ( http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ) supported by LIGR-Seq, PARIS, SPLASH and MIRAO that are high-throughput RNA interactome sequencing data. [1]: http://starbase.sysu.edu.cn/rnaRNA.php?source=lncRNA ...
written 11 months ago by lsp03yjh760
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6 follow
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Tool: Deciphering LncRNA-Target, NcRNA-Target, Pseudogene-Target and mRNA-Target Interactions from RNA Interactome Sequencing Data
... We constructs **[a global-scale landscape of RNA-RNA interactions][1]** involving various classes of ncRNAs (lncRNAs, snoRNAs, tRNAs, snRNAs, pseudogenes and miRNAs) and mRNAs by re-analyzing high-throughput RNA interactome data from **SPLASH, MARIO, PARIS and LIGR-seq methods.** We using stringent ...
lncrna mirna rna interactome tool interactome written 11 months ago by lsp03yjh760
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Comment: C: Finding gene expression from TCGA pan cancer
... cBio portal may use different version of RNA-seq data. I think it is OK for your project. You also can fetch the newest expression values from TCGA GDC website https://portal.gdc.cancer.gov/. ...
written 12 months ago by lsp03yjh760
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Answer: A: Finding gene expression from TCGA pan cancer
... You can use **[Pan-Cancer Analysis Platform][1]** http://starbase.sysu.edu.cn/panCancer.php . It provided expression profiles of ncRNAs (miRNAs, lncRNAs, snoRNAs, pseudogenes, etc.) and protein-coding genes across 32 cancer types ( ~10,000 RNA-seq and ~9,900 miRNA-seq samples) integrated from **TCGA ...
written 12 months ago by lsp03yjh760
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Comment: C: CLIP-seq database contains PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEA
... Thanks for your information. The link is http://starbase.sysu.edu.cn/download.php. We have modified it. ...
written 14 months ago by lsp03yjh760
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Tool: RNA Motifs and CLIP database from PAR-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP, hiCLIP and uvCLIP
... Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking **(CLIP-Seq)** provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions. starBase v3.0 CLIP-seq database provides **more than 700 CLIP-seq data fr ...
clip tool eclip hits-clip par-clip iclip written 14 months ago by lsp03yjh760

Latest awards to lsp03yjh

Appreciated 9 months ago, created a post with more than 5 votes. For Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Teacher 3.4 years ago, created an answer with at least 3 up-votes. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
Scholar 4.0 years ago, created an answer that has been accepted. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: Pan-Cancer Analysis And Networks Of Lncrnas, Mirnas, Cernas And Rna-Binding Prot

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