User: nazaninhoseinkhan

Reputation:
190
Status:
Trusted
Location:
Iran, Islamic Republic Of
Last seen:
1 day, 10 hours ago
Joined:
4 years, 1 month ago
Email:
n****************@gmail.com

I am Nazanin Hosseinkhan, PhD in Bioinformatics. My background is Microbiology and I am seeking for a postdoc position.

Posts by nazaninhoseinkhan

<prev • 130 results • page 1 of 13 • next >
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cannot permanently delete a collection of data sets to retrieve the memory in GALAXY
... Dear all, Recently I have faced with a problem in permanently delete a dataset in GALAXY. I need to delete it to increase my memory space that I need. When I choose the "permanently delete", it asks me if I am sure to do this, but when I click Ok, nothing happends. In addition in the deleted lis ...
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(Closed) cannot delete permanently a collection of datasets in Galaxy
... Dear all, Recently I have faced with a problem in permanently delete a dataset in GALAXY. I need to delete it to increase my memory space that I need. When I choose the "permanently delete", it asks me if I am sure to do this, but when I click Ok, nothing happends. In addition in the deleted lis ...
galaxy collection of datasets written 10 days ago by nazaninhoseinkhan190
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Comment: C: Unable to locate R packages on Bio-linux
... Yes, I tested all this commands, but non did work ...
written 14 days ago by nazaninhoseinkhan190
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Comment: C: Unable to locate R packages on Bio-linux
... Hi, When I write apt-get install r-cran-gcrma or apt-get install r-bioc-packagename, I get this error message: unexpected symbol in apt-get install ...
written 14 days ago by nazaninhoseinkhan190
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(Closed) Unable to locate R packages on Bio-linux
... Dear all, This is my first trying to install R packages on Bio-linux. I have tried "install.packages(packagename)", "apt-get install packagename" and other methods but I could not install the packages. When I tried "apt-get install packagename", I got the error message:"unable to locate package". ...
bio-linux r packages written 16 days ago by nazaninhoseinkhan190
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The proper order of defining groups in GEO2R
... Dear all, I used GEO2R to find the list of differential expressed genes between cancer and normal tissue. I did not know the expression of which group(cancer or normal) is divided on the other group. I found a tutorial in which it had been said that the treated group must be defined first (indica ...
order of defining groups geo2r written 20 days ago by nazaninhoseinkhan190 • updated 12 days ago by Leite200
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CuffDiff results does not seem correct
... Dear all, I have RNASeq data obtained from bacterial drug resistant and drug sensitive samples. I conducted mapping using BWA-MEM in galaxy using the reference genome. But when I run cuffDiff to obtain the list of differential expressed genes using the gtf file, the value1 and value 2 of all gene ...
galaxy cuffdiff rna-seq written 29 days ago by nazaninhoseinkhan190
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Is it correct to consider the genes of grey module resulted from consensus network analysis (WGCNA) as differential expressed?
... Dear all, I have pre and post treatment microarray samples. I performed differential expression analysis to find list of differential expressed genes. In parallel I run WGCNA algorithm to find the consensus network between these two conditions. Approximately 10% of my differential expressed g ...
wgcna consensus network differential expressed written 5 weeks ago by nazaninhoseinkhan190 • updated 5 weeks ago by Devon Ryan75k
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module membership p-value cutoff
... Dear all, I have run WGCNA and I got 10 distinct modules. I want to know if I should apply a filter on module membership p-values (for example p-values <=0.5) before further analysis? What about k_module score? Do I have to filter genes in each module based on k_module score? I will appreciat ...
wgcna cutoff module membership p-value written 4 months ago by nazaninhoseinkhan190 • updated 3 months ago by Biostar ♦♦ 20
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Answer: A: what to do when adjusted p-values are not acceptable in RNASeq?
... Dear JC, Panagiotis, Asaf and Macspider, Thank you so much for your comments. I re-run the Deseq2 after calculating read numbers using Htseq Count and the result was OK this time. I realized that the first time I had introduced the Normal and Cancer groups wrongly. I hope everything goes well wi ...
written 4 months ago by nazaninhoseinkhan190

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