User: nazaninhoseinkhan

Reputation:
210
Status:
Trusted
Location:
Iran, Islamic Republic Of
Last seen:
1 week ago
Joined:
4 years, 4 months ago
Email:
n****************@gmail.com

I am Nazanin Hosseinkhan, PhD in Bioinformatics. My background is Microbiology and I am seeking for a postdoc position.

Posts by nazaninhoseinkhan

<prev • 135 results • page 1 of 14 • next >
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Preparing functional gene set for DECODE program
... Dear all, I want to identify pairs of differential co-expressed genes between two conditions. I used to apply DiffCorr package for this purpose, however I get the following error: "Error in if (max(x) > 1 | min(x) < 0) stop("input p-values must all be in the range 0 to 1!") : missing value w ...
decode functional gene set written 6 weeks ago by nazaninhoseinkhan210 • updated 28 days ago by h.mon13k
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Answer: A: StringTie error: list index out of range
... Hi, I am using StringTie in Galaxy server. ...
written 10 weeks ago by nazaninhoseinkhan210
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StringTie error: list index out of range
... Dear all, I am trying to run StringTie on a aligned RNASeq data. However it ends with this error: ***"Fatal error: Exit code 1 () Traceback (most recent call last): File "/galaxy/main/deps/_conda/envs/__stringtie@1.3.3/bin/prepDE.py", line 171, in if v[2]=="transcript": IndexError: list in ...
stringtie galaxy error written 10 weeks ago by nazaninhoseinkhan210
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Comment: C: StringTie cannot be run as a problem in naming convention
... Hi, Thank u so much. Can I instead change the name of chromosome in gtf file? I have already carried out the alignment step ...
written 10 weeks ago by nazaninhoseinkhan210
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StringTie cannot be run as a problem in naming convention
... Hi all, I know this question has been asked previously, however I still cannot solve my problem. I have obtained both gtf and corresponding fasta files from Pseudomonas aeruginosa database. However the StringTie cannot be run and ends with this error message:"***WARNING: no reference transcripts w ...
gtf stringtie gene naming convention written 10 weeks ago by nazaninhoseinkhan210 • updated 10 weeks ago by jean.elbers160
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cannot permanently delete a collection of data sets to retrieve the memory in GALAXY
... Dear all, Recently I have faced with a problem in permanently delete a dataset in GALAXY. I need to delete it to increase my memory space that I need. When I choose the "permanently delete", it asks me if I am sure to do this, but when I click Ok, nothing happends. In addition in the deleted lis ...
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(Closed) cannot delete permanently a collection of datasets in Galaxy
... Dear all, Recently I have faced with a problem in permanently delete a dataset in GALAXY. I need to delete it to increase my memory space that I need. When I choose the "permanently delete", it asks me if I am sure to do this, but when I click Ok, nothing happends. In addition in the deleted lis ...
galaxy collection of datasets written 3 months ago by nazaninhoseinkhan210
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Comment: C: Unable to locate R packages on Bio-linux
... Yes, I tested all this commands, but non did work ...
written 3 months ago by nazaninhoseinkhan210
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Comment: C: Unable to locate R packages on Bio-linux
... Hi, When I write apt-get install r-cran-gcrma or apt-get install r-bioc-packagename, I get this error message: unexpected symbol in apt-get install ...
written 3 months ago by nazaninhoseinkhan210
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(Closed) Unable to locate R packages on Bio-linux
... Dear all, This is my first trying to install R packages on Bio-linux. I have tried "install.packages(packagename)", "apt-get install packagename" and other methods but I could not install the packages. When I tried "apt-get install packagename", I got the error message:"unable to locate package". ...
bio-linux r packages written 3 months ago by nazaninhoseinkhan210

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