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Comment: Comment: Problem in batch effecting by DeSeq2
6 months ago by nazaninhoseinkhan ▴ 510
2
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3
replies
431
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Problem in removing batch effect by DeSeq2
removing effects DeSeq2 batch colData
updated 6 months ago by 72k • written 6 months ago by ▴ 510
0
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0
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323
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Comment: Comment: Can a pathogenic mutation results in the up-regulation of a gene?
12 months ago by nazaninhoseinkhan ▴ 510
0
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2
replies
323
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Can a pathogenic mutation results in the up-regulation of a gene?
mutation-up-regulation Pathogenic
12 months ago by nazaninhoseinkhan ▴ 510
0
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0
replies
291
views
"read error; binarycodec in readmode" error in HMMRATAC
BAM HMMRATAC
updated 19 days ago by 39k • written 17 months ago by ▴ 510
0
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0
replies
252
views
How can I get plate information for a single cell sequencing dataset
sequencing cell single plate information
19 months ago by nazaninhoseinkhan ▴ 510
0
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1
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628
views
Comment: Comment: Why only reverse fatsq file is used for mapping step in single cell RNA sequenci
19 months ago by nazaninhoseinkhan ▴ 510
3
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3
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628
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Why only reverse fatsq file is used for mapping step in single cell RNA sequencing analysis?
ScRNA-Seq
updated 10 weeks ago by 39k • written 19 months ago by ▴ 510
0
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1
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368
views
EnsemblVEP could not generate any output for a list of frameshift insertion input
Frame_Shift_Insertion EnsemblVEP
22 months ago by nazaninhoseinkhan ▴ 510
0
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0
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368
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Answer: Answer: EnsemblVEP could not generate any output for a list of frameshift insertion inpu
22 months ago by nazaninhoseinkhan ▴ 510
0
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3
replies
1.5k
views
conversion of case_ids to file_ids TCGA data
TCGA case_ids conversion
updated 22 months ago by • 0 • written 4.0 years ago by ▴ 510
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0
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1.5k
views
Comment: Comment: conversion of case_ids to file_ids TCGA data
22 months ago by nazaninhoseinkhan ▴ 510
0
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0
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555
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Comment: Comment: Matching the file names with exposure file in TCGA
22 months ago by nazaninhoseinkhan ▴ 510
0
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2
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555
views
Matching the file names with exposure file in TCGA
FPKM exposure TCGA
updated 10 weeks ago by 39k • written 23 months ago by ▴ 510
7
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18
replies
4.5k
views
problem in matching the names between file names and patients Id in TCGA
TCGA CNV problem in matching
updated 2.3 years ago by ▴ 30 • written 5.0 years ago by ▴ 510
0
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1
reply
1.9k
views
module membership p-value cutoff
wgcna module membership p-value cutoff
updated 2.3 years ago by 20 • written 5.7 years ago by ▴ 510
26
votes
57
replies
6.4k
views
how to generate CNV plot from VEP results
copy number alteration VEP CNV plot
updated 2.4 years ago by 39k • written 4.7 years ago by ▴ 510
0
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0
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968
views
Comment: C: Methylation-Gene expression correlation
2.7 years ago by nazaninhoseinkhan ▴ 510
0
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1
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968
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Comment: C: Methylation-Gene expression correlation
2.7 years ago by nazaninhoseinkhan ▴ 510
0
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1
reply
968
views
Comment: C: Methylation-Gene expression correlation
2.7 years ago by nazaninhoseinkhan ▴ 510
1
vote
6
replies
968
views
Methylation-Gene expression correlation
DNA methylation Gene expression Correlation
updated 2.7 years ago by 85k • written 2.8 years ago by ▴ 510
0
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1
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1.0k
views
Comment: C: visualizing mutational data using Maftools for reference genome hg19
2.7 years ago by nazaninhoseinkhan ▴ 510
0
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3
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1.0k
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visualizing mutational data using Maftools for reference genome hg19
hg19 visualize Maftools SNV
2.7 years ago by nazaninhoseinkhan ▴ 510
2
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2
replies
1.9k
views
How to find targets for large number of lncRNAs
lncRNA targets
updated 3.0 years ago by 20 • written 6.7 years ago by ▴ 510
0
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0
replies
1.8k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.0 years ago by nazaninhoseinkhan ▴ 510
0
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1
reply
1.8k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.0 years ago by nazaninhoseinkhan ▴ 510
0
votes
1
reply
1.8k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.0 years ago by nazaninhoseinkhan ▴ 510
0
votes
1
reply
1.8k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.0 years ago by nazaninhoseinkhan ▴ 510
0
votes
1
reply
1.8k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.0 years ago by nazaninhoseinkhan ▴ 510
0
votes
1
reply
1.8k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.0 years ago by nazaninhoseinkhan ▴ 510
0
votes
1
reply
1.8k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.0 years ago by nazaninhoseinkhan ▴ 510
1
vote
18
replies
1.8k
views
Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip"
Negative expression values
updated 3.1 years ago by 85k • written 3.1 years ago by ▴ 510
0
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1
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1.8k
views
Comment: A: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.1 years ago by nazaninhoseinkhan ▴ 510
1
vote
0
replies
547
views
Comment: C: several copy number alterations in the same position in an individual
3.1 years ago by nazaninhoseinkhan ▴ 510
2
votes
3
replies
547
views
several copy number alterations in the same position in an individual
SCNA
updated 3.1 years ago by 39k • written 3.1 years ago by ▴ 510
0
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0
replies
838
views
Comment: C: MUC5AC is not present in deseq2 results
3.2 years ago by nazaninhoseinkhan ▴ 510
0
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1
reply
838
views
Comment: C: MUC5AC is not present in deseq2 results
3.2 years ago by nazaninhoseinkhan ▴ 510
0
votes
1
reply
838
views
Comment: C: MUC5AC is not present in deseq2 results
3.2 years ago by nazaninhoseinkhan ▴ 510
0
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0
replies
838
views
Comment: C: MUC5AC is not present in deseq2 results
3.2 years ago by nazaninhoseinkhan ▴ 510
0
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0
replies
838
views
Comment: C: MUC5AC is not present in deseq2 results
3.2 years ago by nazaninhoseinkhan ▴ 510
0
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1
reply
838
views
Comment: C: MUC5AC is not present in deseq2 results
3.2 years ago by nazaninhoseinkhan ▴ 510
3
votes
12
replies
838
views
MUC5AC is not present in deseq2 results
RNA-Seq Deseq2 MUC5AC
3.2 years ago by nazaninhoseinkhan ▴ 510
0
votes
0
replies
849
views
How to specify pipelines(muse, mutect,...) in TCGAbiolinks when you want to use hg19?
TCGAbiolinks mutations pipelines selection hg19
3.3 years ago by nazaninhoseinkhan ▴ 510
0
votes
0
replies
610
views
Comment: C: What should I do when some probes of a gene is detected as hypomethylated and ot
3.4 years ago by nazaninhoseinkhan ▴ 510
0
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1
reply
610
views
Comment: C: What should I do when some probes of a gene is detected as hypomethylated and ot
3.4 years ago by nazaninhoseinkhan ▴ 510
2
votes
3
replies
610
views
What should I do when some probes of a gene is detected as hypomethylated and other probes of the same gene is hypermethylated
DNA methylation hyper-hypomethyaltion same gene
3.4 years ago by nazaninhoseinkhan ▴ 510
0
votes
0
replies
428
views
problem in finding follow_up samples belong to the same patients in TCGA
TCGA codes follow_up samples
3.5 years ago by nazaninhoseinkhan ▴ 510
0
votes
1
reply
808
views
Comment: C: No mutations or copy number alterations was detected in stage I of cancer
3.5 years ago by nazaninhoseinkhan ▴ 510
1
vote
1
reply
808
views
Comment: C: No mutations or copy number alterations was detected in stage I of cancer
3.5 years ago by nazaninhoseinkhan ▴ 510
6
votes
6
replies
808
views
No mutations or copy number alterations was detected in stage I of cancer
SNP copy number alteration stage one tumor
3.5 years ago by nazaninhoseinkhan ▴ 510
302 results • Page 1 of 7
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