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318
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Comment: Comment: Problem with survival analysis with gene symbols containing hyphen
9 weeks ago by nazaninhoseinkhan ▴ 520
1
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2
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318
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Problem with survival analysis with gene symbols containing hyphen
R Survival-analysis
9 weeks ago by nazaninhoseinkhan ▴ 520
0
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1
reply
717
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Comment: Comment: Problem in batch effecting by DeSeq2
17 months ago by nazaninhoseinkhan ▴ 520
2
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3
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717
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Problem in removing batch effect by DeSeq2
removing effects DeSeq2 batch colData
updated 17 months ago by 81k • written 17 months ago by ▴ 520
0
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0
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504
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Comment: Comment: Can a pathogenic mutation results in the up-regulation of a gene?
23 months ago by nazaninhoseinkhan ▴ 520
0
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2
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504
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Can a pathogenic mutation results in the up-regulation of a gene?
mutation-up-regulation Pathogenic
23 months ago by nazaninhoseinkhan ▴ 520
0
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0
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449
views
"read error; binarycodec in readmode" error in HMMRATAC
BAM HMMRATAC
updated 11 months ago by 43k • written 2.3 years ago by ▴ 520
0
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0
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381
views
How can I get plate information for a single cell sequencing dataset
sequencing cell single plate information
2.4 years ago by nazaninhoseinkhan ▴ 520
0
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1
reply
886
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Comment: Comment: Why only reverse fatsq file is used for mapping step in single cell RNA sequenci
2.4 years ago by nazaninhoseinkhan ▴ 520
3
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3
replies
886
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Why only reverse fatsq file is used for mapping step in single cell RNA sequencing analysis?
ScRNA-Seq
updated 13 months ago by 43k • written 2.4 years ago by ▴ 520
0
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1
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520
views
EnsemblVEP could not generate any output for a list of frameshift insertion input
Frame_Shift_Insertion EnsemblVEP
2.7 years ago by nazaninhoseinkhan ▴ 520
0
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0
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520
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Answer: Answer: EnsemblVEP could not generate any output for a list of frameshift insertion inpu
2.7 years ago by nazaninhoseinkhan ▴ 520
0
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3
replies
1.7k
views
conversion of case_ids to file_ids TCGA data
TCGA case_ids conversion
updated 2.8 years ago by • 0 • written 4.9 years ago by ▴ 520
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0
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1.7k
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Comment: Comment: conversion of case_ids to file_ids TCGA data
2.8 years ago by nazaninhoseinkhan ▴ 520
0
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0
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758
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Comment: Comment: Matching the file names with exposure file in TCGA
2.8 years ago by nazaninhoseinkhan ▴ 520
0
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2
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758
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Matching the file names with exposure file in TCGA
FPKM exposure TCGA
updated 13 months ago by 43k • written 2.8 years ago by ▴ 520
7
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18
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5.5k
views
problem in matching the names between file names and patients Id in TCGA
TCGA CNV problem in matching
updated 3.2 years ago by ▴ 30 • written 5.9 years ago by ▴ 520
0
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1
reply
2.1k
views
module membership p-value cutoff
wgcna module membership p-value cutoff
updated 3.2 years ago by 20 • written 6.6 years ago by ▴ 520
26
votes
57
replies
8.2k
views
how to generate CNV plot from VEP results
copy number alteration VEP CNV plot
updated 3.3 years ago by 43k • written 5.5 years ago by ▴ 520
0
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0
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1.3k
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Comment: C: Methylation-Gene expression correlation
3.6 years ago by nazaninhoseinkhan ▴ 520
0
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1
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1.3k
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Comment: C: Methylation-Gene expression correlation
3.6 years ago by nazaninhoseinkhan ▴ 520
0
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1
reply
1.3k
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Comment: C: Methylation-Gene expression correlation
3.6 years ago by nazaninhoseinkhan ▴ 520
1
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6
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1.3k
views
Methylation-Gene expression correlation
DNA methylation Gene expression Correlation
updated 3.6 years ago by 87k • written 3.7 years ago by ▴ 520
0
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1
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1.4k
views
Comment: C: visualizing mutational data using Maftools for reference genome hg19
3.6 years ago by nazaninhoseinkhan ▴ 520
1
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3
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1.4k
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visualizing mutational data using Maftools for reference genome hg19
hg19 visualize Maftools SNV
3.6 years ago by nazaninhoseinkhan ▴ 520
2
votes
2
replies
2.0k
views
How to find targets for large number of lncRNAs
lncRNA targets
updated 3.9 years ago by 20 • written 7.6 years ago by ▴ 520
0
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0
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2.6k
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Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by nazaninhoseinkhan ▴ 520
0
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1
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2.6k
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Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by nazaninhoseinkhan ▴ 520
0
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1
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2.6k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by nazaninhoseinkhan ▴ 520
0
votes
1
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2.6k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by nazaninhoseinkhan ▴ 520
0
votes
1
reply
2.6k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by nazaninhoseinkhan ▴ 520
0
votes
1
reply
2.6k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by nazaninhoseinkhan ▴ 520
0
votes
1
reply
2.6k
views
Comment: C: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by nazaninhoseinkhan ▴ 520
1
vote
18
replies
2.6k
views
Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip"
Negative expression values
updated 3.9 years ago by 87k • written 3.9 years ago by ▴ 520
0
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1
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2.6k
views
Comment: A: Negative gene expression values in "Illumina HumanHT-12 WG-DASL V4.0 R2 expressi
3.9 years ago by nazaninhoseinkhan ▴ 520
1
vote
0
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753
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Comment: C: several copy number alterations in the same position in an individual
3.9 years ago by nazaninhoseinkhan ▴ 520
2
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3
replies
753
views
several copy number alterations in the same position in an individual
SCNA
updated 3.9 years ago by 43k • written 4.0 years ago by ▴ 520
0
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0
replies
1.2k
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Comment: C: MUC5AC is not present in deseq2 results
4.1 years ago by nazaninhoseinkhan ▴ 520
0
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1
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1.2k
views
Comment: C: MUC5AC is not present in deseq2 results
4.1 years ago by nazaninhoseinkhan ▴ 520
0
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1
reply
1.2k
views
Comment: C: MUC5AC is not present in deseq2 results
4.1 years ago by nazaninhoseinkhan ▴ 520
0
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0
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1.2k
views
Comment: C: MUC5AC is not present in deseq2 results
4.1 years ago by nazaninhoseinkhan ▴ 520
0
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0
replies
1.2k
views
Comment: C: MUC5AC is not present in deseq2 results
4.1 years ago by nazaninhoseinkhan ▴ 520
0
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1
reply
1.2k
views
Comment: C: MUC5AC is not present in deseq2 results
4.1 years ago by nazaninhoseinkhan ▴ 520
3
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12
replies
1.2k
views
MUC5AC is not present in deseq2 results
RNA-Seq Deseq2 MUC5AC
4.1 years ago by nazaninhoseinkhan ▴ 520
0
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0
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1.0k
views
How to specify pipelines(muse, mutect,...) in TCGAbiolinks when you want to use hg19?
TCGAbiolinks mutations pipelines selection hg19
4.2 years ago by nazaninhoseinkhan ▴ 520
0
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0
replies
836
views
Comment: C: What should I do when some probes of a gene is detected as hypomethylated and ot
4.3 years ago by nazaninhoseinkhan ▴ 520
0
votes
1
reply
836
views
Comment: C: What should I do when some probes of a gene is detected as hypomethylated and ot
4.3 years ago by nazaninhoseinkhan ▴ 520
2
votes
3
replies
836
views
What should I do when some probes of a gene is detected as hypomethylated and other probes of the same gene is hypermethylated
DNA methylation hyper-hypomethyaltion same gene
4.3 years ago by nazaninhoseinkhan ▴ 520
0
votes
0
replies
520
views
problem in finding follow_up samples belong to the same patients in TCGA
TCGA codes follow_up samples
4.3 years ago by nazaninhoseinkhan ▴ 520
0
votes
1
reply
1.1k
views
Comment: C: No mutations or copy number alterations was detected in stage I of cancer
4.4 years ago by nazaninhoseinkhan ▴ 520
304 results • Page 1 of 7
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