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Answer: Answer: When converting .ped, .bim and .fam files to .pgen, .psam and .pvar in PLINK2
4.4 years ago by chrchang523 11k
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Answer: Answer: Efficient way to merge multiple single sample vcf files with same variants / loa
4.4 years ago by chrchang523 11k
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Answer: Answer: Can we add additional columns to ped and map files in PLINK?
4.5 years ago by chrchang523 11k
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Comment: Comment: How to calculate frequencies of SNPs with respect to a particular allele by plin
4.5 years ago by chrchang523 11k
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Comment: Comment: GWAS in Plink - phenotype file format
4.5 years ago by chrchang523 11k
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Comment: Comment: Update FAM file Plink for fid and pheno
4.5 years ago by chrchang523 11k
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9.2k
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Answer: Answer: Update FAM file Plink for fid and pheno
4.5 years ago by chrchang523 11k
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Comment: Comment: How to calculate frequencies of SNPs with respect to a particular allele by plin
4.5 years ago by chrchang523 11k
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4.0k
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Answer: Answer: How to calculate frequencies of SNPs with respect to a particular allele by plin
4.5 years ago by chrchang523 11k
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3.1k
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Comment: Comment: Plink extract missing (and replaced) variant IDs from VCF
4.5 years ago by chrchang523 11k
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Comment: C: GWAS in Plink - phenotype file format
4.5 years ago by chrchang523 11k
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Comment: C: PLINK:Error: Variant '.' is not biallelic. To obtain a full list of merge failur
4.5 years ago by chrchang523 11k
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Comment: C: PLINK:Error: Variant '.' is not biallelic. To obtain a full list of merge failur
4.5 years ago by chrchang523 11k
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Comment: C: change missing genotype in bcf file from 0/0 to ./. to run plink
4.5 years ago by chrchang523 11k
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1.8k
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Comment: C: change missing genotype in bcf file from 0/0 to ./. to run plink
4.5 years ago by chrchang523 11k
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Answer: A: How to generate haplotypes with SNPs from WGS ?
4.5 years ago by chrchang523 11k
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Answer: A: Unused command line option: --make-just-fam
4.5 years ago by chrchang523 11k
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Comment: C: Minor allele count report with --freq count in PLINK2
4.5 years ago by chrchang523 11k
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Comment: C: Check for duplicates and determine sex from the VCF in a cohort of about 110 pat
4.5 years ago by chrchang523 11k
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Comment: C: Determine the sex of a sample from a .vcf
4.5 years ago by chrchang523 11k
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Answer: A: Minor allele count report with --freq count in PLINK2
4.5 years ago by chrchang523 11k
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3.3k
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Comment: C: ERROR::: vcf to PLINK
4.5 years ago by chrchang523 11k
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Comment: C: ERROR::: vcf to PLINK
4.5 years ago by chrchang523 11k
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3.3k
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Comment: C: ERROR::: vcf to PLINK
4.5 years ago by chrchang523 11k
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2.5k
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Comment: C: PCA with PLINK and SmartPCA: same imput file but different results in my plot. W
4.6 years ago by chrchang523 11k
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2.5k
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Comment: C: PCA with PLINK and SmartPCA: same imput file but different results in my plot. W
4.6 years ago by chrchang523 11k
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1.8k
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Comment: C: bgen files split by chromosome
4.6 years ago by chrchang523 11k
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Comment: C: Beagle imputation - duplication position error
4.6 years ago by chrchang523 11k
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Comment: C: Reorder filter options in PLINK
4.6 years ago by chrchang523 11k
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1.1k
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Comment: C: Reorder filter options in PLINK
4.6 years ago by chrchang523 11k
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Comment: C: Split plink files from multiallelic to biallelic
4.6 years ago by chrchang523 11k
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4.0k
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Comment: C: Split plink files from multiallelic to biallelic
4.6 years ago by chrchang523 11k
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Answer: A: Adding SNP ID to original VCF file
4.6 years ago by chrchang523 11k
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2.1k
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Comment: C: PLINK extracting more variants than in file when calculating LD (with --extract
4.6 years ago by chrchang523 11k
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2.1k
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Comment: C: PLINK extracting more variants than in file when calculating LD (with --extract
4.6 years ago by chrchang523 11k
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3.1k
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Answer: A: Plink error with reading phenotype file
4.6 years ago by chrchang523 11k
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3
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5.7k
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Comment: C: Principle component analysis using VCF file as input.
4.6 years ago by chrchang523 11k
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1.1k
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Answer: A: What exactly is the 'p' in PLINK --thin?
4.6 years ago by chrchang523 11k
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1.7k
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Comment: C: Comparison of allele frequencies between population
4.7 years ago by chrchang523 11k
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7.6k
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Comment: C: bcf convert 23andme to vcf
4.7 years ago by chrchang523 11k
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9.7k
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Comment: C: Filtering multi-allelic sites in VCF files
4.7 years ago by chrchang523 11k
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9.7k
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Comment: C: Filtering multi-allelic sites in VCF files
4.7 years ago by chrchang523 11k
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1
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9.7k
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Comment: C: Filtering multi-allelic sites in VCF files
4.7 years ago by chrchang523 11k
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1.7k
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Comment: C: Comparison of allele frequencies between population
4.7 years ago by chrchang523 11k
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1.7k
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Answer: A: Comparison of allele frequencies between population
4.7 years ago by chrchang523 11k
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1.5k
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Answer: A: Does anyone know what test or model is being used to calculate the regression co
4.7 years ago by chrchang523 11k
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3.5k
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Comment: C: Correct command line syntax for plink2
4.7 years ago by chrchang523 11k
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3.5k
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Answer: A: Correct command line syntax for plink2
4.7 years ago by chrchang523 11k
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1.6k
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Answer: A: Prevent SNPs being filtered out due to MAF in PLINK
4.8 years ago by chrchang523 11k
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1.5k
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Answer: A: Merging multiple .ped/.map files for PLINK analisys purposes
4.8 years ago by chrchang523 11k
914 results • Page 6 of 19
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