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666
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Answer: Answer: looking for 1000g hg38 reference data to anchor with my genomic data to plot th
7 days ago by chrchang523 10k
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394
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Answer: Answer: How can I get an allele count table from a .vcf file?
21 days ago by chrchang523 10k
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0
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269
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Answer: Answer: Generating .bed file and .map file for polyploid vcf file through plink
10 weeks ago by chrchang523 10k
1
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1
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617
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Answer: Answer: Force PLINK2 to neglect chrX as the sex chromosome
12 weeks ago by chrchang523 10k
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0
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551
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Answer: Answer: Easy way to find out which allele is minor allele from bed file?
12 weeks ago by chrchang523 10k
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2.6k
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Comment: Comment: Problem to remove subset of patients with plink
3 months ago by chrchang523 10k
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0
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546
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Comment: Comment: PLINK multivariable GLM output: p-value without BETA and SE
3 months ago by chrchang523 10k
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0
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1.4k
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Comment: Comment: PLINK p value returning NA
3 months ago by chrchang523 10k
1
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0
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546
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Answer: Answer: PCA results from PLINK and Hail vastly different
5 months ago by chrchang523 10k
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1
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1.0k
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Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
5 months ago by chrchang523 10k
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1
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722
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Comment: Comment: merging VCF files using bcftools - everyone becomes related
5 months ago by chrchang523 10k
1
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3
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1.0k
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Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
5 months ago by chrchang523 10k
0
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0
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630
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Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
5 months ago by chrchang523 10k
0
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1
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639
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Answer: Answer: allele matching between identical genotypes
5 months ago by chrchang523 10k
2
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1
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472
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Answer: Answer: number of homozygotes with phenotype
6 months ago by chrchang523 10k
2
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1
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621
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Answer: Answer: HWE test different result according Pheno data
6 months ago by chrchang523 10k
1
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1
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592
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Answer: Answer: Clumping with r2=0 and 250kb radius in plink
8 months ago by chrchang523 10k
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0
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788
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Comment: Comment: PLINK Error: No valid entries in --score file
8 months ago by chrchang523 10k
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0
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566
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Answer: Answer: Plink Error
8 months ago by chrchang523 10k
0
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0
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1.0k
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Comment: Comment: Allele frequncies in plink including physical position in the output
9 months ago by chrchang523 10k
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1
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1.0k
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Answer: Answer: Allele frequncies in plink including physical position in the output
9 months ago by chrchang523 10k
0
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1
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1.0k
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Comment: Comment: Allele frequncies in plink including physical position in the output
9 months ago by chrchang523 10k
1
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0
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524
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Comment: Comment: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
10 months ago by chrchang523 10k
0
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0
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1.3k
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Answer: Answer: Is there a way to get a list of all homogygous sites for each sample with plink
10 months ago by chrchang523 10k
0
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0
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590
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Comment: Comment: Restricting vcf entries based on ID length
10 months ago by chrchang523 10k
2
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0
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667
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Answer: Answer: Filter VCF File by VCF Format Variants
10 months ago by chrchang523 10k
3
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0
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761
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Answer: Answer: reading pgen file into R
11 months ago by chrchang523 10k
1
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0
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814
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Comment: Comment: simulation
11 months ago by chrchang523 10k
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1
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1.5k
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Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
12 months ago by chrchang523 10k
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1
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1.5k
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Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
12 months ago by chrchang523 10k
0
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1
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1.5k
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Answer: Answer: PLINK linear association testing command with an interaction and 2 covariates te
12 months ago by chrchang523 10k
0
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0
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572
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Comment: Comment: plink: king table, why kinship=0.5 and IBS0=0
12 months ago by chrchang523 10k
0
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0
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673
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Answer: Answer: Using -r2 in plink1.9 with .bim file that has CHR:POS entries
12 months ago by chrchang523 10k
0
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0
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538
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Answer: Answer: VCFTools MAF Filter needs Efficiency Inquiry
12 months ago by chrchang523 10k
0
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0
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565
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Answer: Answer: Assistance Needed with Converting VCF File for BOLT-LMM Usage
12 months ago by chrchang523 10k
2
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0
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1.1k
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Answer: Answer: PLINK1.9 check sex problem
12 months ago by chrchang523 10k
0
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0
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674
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Answer: Answer: PLINK, Unphased heterozygous hardcalls in partially-phased variants are poorly r
13 months ago by chrchang523 10k
1
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0
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743
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Answer: Answer: Base-10 log transformed P-values and clump with plink v.1.9
13 months ago by chrchang523 10k
2
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0
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1.1k
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Comment: Comment: How to calculate kinship matrix table from vcf file
14 months ago by chrchang523 10k
1
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0
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518
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Answer: Answer: How do I restrict to only hm3 SNPs for plink analyses?
14 months ago by chrchang523 10k
0
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0
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887
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Comment: Comment: PLINK not converting entire vcf to bed file
14 months ago by chrchang523 10k
0
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0
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1.3k
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Comment: Comment: Linkage Disequilibrium with Plink
14 months ago by chrchang523 10k
0
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1
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1.3k
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Answer: Answer: Linkage Disequilibrium with Plink
14 months ago by chrchang523 10k
2
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0
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2.3k
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Answer: Answer: KING kinship inference error
14 months ago by chrchang523 10k
1
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0
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816
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Answer: Answer: Where do I get a large reference VCF?
15 months ago by chrchang523 10k
1
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1
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987
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Comment: Comment: PLINK Error: Invalid QUAL value on line
15 months ago by chrchang523 10k
1
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1
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987
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Answer: Answer: PLINK Error: Invalid QUAL value on line
15 months ago by chrchang523 10k
2
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0
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846
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Answer: Answer: Calculate the kinship matrix from NGS data
15 months ago by chrchang523 10k
0
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0
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517
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Answer: Answer: invalid --hwe parameter sequence error when doing QC
17 months ago by chrchang523 10k
0
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0
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1.2k
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Answer: Answer: make BED file from existing BIM and FAM files
17 months ago by chrchang523 10k
898 results • Page 1 of 18
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