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2
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0
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179
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Comment: Comment: How to calculate kinship matrix table from vcf file
6 days ago by chrchang523 10k
1
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0
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145
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Answer: Answer: How do I restrict to only hm3 SNPs for plink analyses?
9 days ago by chrchang523 10k
0
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0
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270
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Comment: Comment: PLINK not converting entire vcf to bed file
14 days ago by chrchang523 10k
0
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0
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451
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Comment: Comment: Linkage Disequilibrium with Plink
22 days ago by chrchang523 10k
0
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1
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451
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Answer: Answer: Linkage Disequilibrium with Plink
27 days ago by chrchang523 10k
2
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0
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1.2k
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Answer: Answer: KING kinship inference error
27 days ago by chrchang523 10k
1
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0
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300
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Answer: Answer: Where do I get a large reference VCF?
5 weeks ago by chrchang523 10k
1
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1
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331
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Comment: Comment: PLINK Error: Invalid QUAL value on line
8 weeks ago by chrchang523 10k
1
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1
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331
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Answer: Answer: PLINK Error: Invalid QUAL value on line
8 weeks ago by chrchang523 10k
2
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0
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313
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Answer: Answer: Calculate the kinship matrix from NGS data
8 weeks ago by chrchang523 10k
0
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0
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175
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Answer: Answer: invalid --hwe parameter sequence error when doing QC
3 months ago by chrchang523 10k
0
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0
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495
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Answer: Answer: make BED file from existing BIM and FAM files
4 months ago by chrchang523 10k
0
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1
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886
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Comment: Comment: PLINK2 selecting variants based on INFO score
4 months ago by chrchang523 10k
0
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1
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886
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Comment: Comment: PLINK2 selecting variants based on INFO score
4 months ago by chrchang523 10k
0
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1
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886
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Comment: Comment: PLINK2 selecting variants based on INFO score
4 months ago by chrchang523 10k
1
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1
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659
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Answer: Answer: VCF to Plink files
4 months ago by chrchang523 10k
2
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1
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460
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Answer: Answer: drop duplicate insertion deletions in VCF at same position while keeping one
4 months ago by chrchang523 10k
0
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0
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906
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Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
4 months ago by chrchang523 10k
0
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0
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1.2k
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Comment: Comment: PLINK --geno and --mind
4 months ago by chrchang523 10k
0
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1
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1.2k
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Comment: Comment: PLINK --geno and --mind
4 months ago by chrchang523 10k
1
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1
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1.2k
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Answer: Answer: PLINK --geno and --mind
updated 4 months ago by 39k • written 4 months ago by 10k
1
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1
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622
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Answer: Answer: How to correct the long variants ID error?
4 months ago by chrchang523 10k
0
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0
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526
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Comment: Comment: PCA projection with --score plink2.sscore output: what are the ALLELE_CT & NAMED
4 months ago by chrchang523 10k
1
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1
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526
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Comment: Comment: PCA projection with --score plink2.sscore output: what are the ALLELE_CT & NAMED
4 months ago by chrchang523 10k
1
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1
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6.5k
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Comment: Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
5 months ago by chrchang523 10k
0
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1
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6.5k
views
Comment: Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
5 months ago by chrchang523 10k
0
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0
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572
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Comment: Comment: Plink - running too slow.
6 months ago by chrchang523 10k
0
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1
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572
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Comment: Comment: Plink - running too slow.
6 months ago by chrchang523 10k
0
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0
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556
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Answer: Answer: How to measure pairwise genetic distance in all samples of a VCF file
7 months ago by chrchang523 10k
2
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1
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566
views
Answer: Answer: long view SNPs in vcf file
7 months ago by chrchang523 10k
1
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0
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340
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Answer: Answer: Calculate missing genotypes per sample with plink2
7 months ago by chrchang523 10k
0
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0
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907
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Answer: Answer: PLINK1.9 Segmentation fault (core dumped)
7 months ago by chrchang523 10k
1
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0
replies
907
views
Comment: Comment: PLINK1.9 Segmentation fault (core dumped)
7 months ago by chrchang523 10k
1
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0
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20k
views
Comment: Comment: Best way to query VCF for specific variants
7 months ago by chrchang523 10k
0
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0
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271
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Comment: Comment: GWAS with x and y chrosome files plink2
8 months ago by chrchang523 10k
2
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1
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575
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Answer: Answer: PLINK p value returning NA
8 months ago by chrchang523 10k
1
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1
reply
1.5k
views
Comment: Comment: Error in converting vcf file to plink format
8 months ago by chrchang523 10k
2
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1
reply
957
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Comment: Comment: PLINK - individual variance with the SNPs weights
8 months ago by chrchang523 10k
1
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1
reply
957
views
Comment: Comment: PLINK - individual variance with the SNPs weights
8 months ago by chrchang523 10k
0
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1
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957
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Comment: Comment: PLINK - individual variance with the SNPs weights
8 months ago by chrchang523 10k
0
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0
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804
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Comment: Comment: plink logistic regression error
8 months ago by chrchang523 10k
1
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1
reply
804
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Comment: Comment: plink logistic regression error
8 months ago by chrchang523 10k
0
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1
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804
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Comment: Comment: plink logistic regression error
8 months ago by chrchang523 10k
2
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0
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464
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Answer: Answer: Better splitting of mutliallelic sites then bcftools norm --m-any
9 months ago by chrchang523 10k
0
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1
reply
504
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Answer: Answer: plink2 fails to calculate allele frequency
9 months ago by chrchang523 10k
1
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1
reply
827
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Comment: Comment: SNP array plink to VCF validation issue
9 months ago by chrchang523 10k
0
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1
reply
827
views
Comment: Comment: SNP array plink to VCF validation issue
9 months ago by chrchang523 10k
1
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1
reply
511
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Answer: Answer: Using a phenotype file with several phenotype columns- PLINK2
9 months ago by chrchang523 10k
1
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0
replies
1.2k
views
Comment: Comment: Plink : Variant names are limited to 16000 characters
9 months ago by chrchang523 10k
3
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1
reply
827
views
Answer: Answer: SNP array plink to VCF validation issue
9 months ago by chrchang523 10k
860 results • Page 1 of 18
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