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445
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Comment: Comment: PLINK multivariable GLM output: p-value without BETA and SE
9 days ago by chrchang523 10k
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1.2k
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Comment: Comment: PLINK p value returning NA
9 days ago by chrchang523 10k
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402
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Answer: Answer: PCA results from PLINK and Hail vastly different
7 weeks ago by chrchang523 10k
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1
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703
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Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
9 weeks ago by chrchang523 10k
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1
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502
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Comment: Comment: merging VCF files using bcftools - everyone becomes related
9 weeks ago by chrchang523 10k
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3
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703
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Comment: Comment: Different relatedness estimates by PLINK and VCFTOOLS despite same method
9 weeks ago by chrchang523 10k
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0
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457
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Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
9 weeks ago by chrchang523 10k
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1
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467
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Answer: Answer: allele matching between identical genotypes
11 weeks ago by chrchang523 10k
2
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1
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353
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Answer: Answer: number of homozygotes with phenotype
3 months ago by chrchang523 10k
2
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1
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519
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Answer: Answer: HWE test different result according Pheno data
3 months ago by chrchang523 10k
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1
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433
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Answer: Answer: Clumping with r2=0 and 250kb radius in plink
5 months ago by chrchang523 10k
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0
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592
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Comment: Comment: PLINK Error: No valid entries in --score file
5 months ago by chrchang523 10k
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0
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462
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Answer: Answer: Plink Error
5 months ago by chrchang523 10k
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0
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824
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Comment: Comment: Allele frequncies in plink including physical position in the output
6 months ago by chrchang523 10k
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1
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824
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Answer: Answer: Allele frequncies in plink including physical position in the output
6 months ago by chrchang523 10k
0
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1
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824
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Comment: Comment: Allele frequncies in plink including physical position in the output
6 months ago by chrchang523 10k
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0
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457
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Comment: Comment: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
6 months ago by chrchang523 10k
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0
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1.1k
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Answer: Answer: Is there a way to get a list of all homogygous sites for each sample with plink
6 months ago by chrchang523 10k
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0
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509
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Comment: Comment: Restricting vcf entries based on ID length
6 months ago by chrchang523 10k
2
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0
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557
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Answer: Answer: Filter VCF File by VCF Format Variants
7 months ago by chrchang523 10k
3
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0
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651
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Answer: Answer: reading pgen file into R
7 months ago by chrchang523 10k
1
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0
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700
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Comment: Comment: simulation
8 months ago by chrchang523 10k
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1
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1.3k
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Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
8 months ago by chrchang523 10k
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1
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1.3k
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Comment: Comment: PLINK linear association testing command with an interaction and 2 covariates te
8 months ago by chrchang523 10k
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1
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1.3k
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Answer: Answer: PLINK linear association testing command with an interaction and 2 covariates te
8 months ago by chrchang523 10k
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0
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487
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Comment: Comment: plink: king table, why kinship=0.5 and IBS0=0
8 months ago by chrchang523 10k
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0
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586
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Answer: Answer: Using -r2 in plink1.9 with .bim file that has CHR:POS entries
8 months ago by chrchang523 10k
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0
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439
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Answer: Answer: VCFTools MAF Filter needs Efficiency Inquiry
8 months ago by chrchang523 10k
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0
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478
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Answer: Answer: Assistance Needed with Converting VCF File for BOLT-LMM Usage
8 months ago by chrchang523 10k
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0
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851
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Answer: Answer: PLINK1.9 check sex problem
9 months ago by chrchang523 10k
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0
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581
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Answer: Answer: PLINK, Unphased heterozygous hardcalls in partially-phased variants are poorly r
10 months ago by chrchang523 10k
1
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0
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633
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Answer: Answer: Base-10 log transformed P-values and clump with plink v.1.9
10 months ago by chrchang523 10k
2
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0
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880
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Comment: Comment: How to calculate kinship matrix table from vcf file
10 months ago by chrchang523 10k
1
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0
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446
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Answer: Answer: How do I restrict to only hm3 SNPs for plink analyses?
10 months ago by chrchang523 10k
0
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0
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794
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Comment: Comment: PLINK not converting entire vcf to bed file
10 months ago by chrchang523 10k
0
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0
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1.2k
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Comment: Comment: Linkage Disequilibrium with Plink
11 months ago by chrchang523 10k
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1
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1.2k
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Answer: Answer: Linkage Disequilibrium with Plink
11 months ago by chrchang523 10k
2
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0
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2.0k
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Answer: Answer: KING kinship inference error
11 months ago by chrchang523 10k
1
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0
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714
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Answer: Answer: Where do I get a large reference VCF?
11 months ago by chrchang523 10k
1
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1
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857
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Comment: Comment: PLINK Error: Invalid QUAL value on line
12 months ago by chrchang523 10k
1
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1
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857
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Answer: Answer: PLINK Error: Invalid QUAL value on line
12 months ago by chrchang523 10k
2
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0
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732
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Answer: Answer: Calculate the kinship matrix from NGS data
12 months ago by chrchang523 10k
0
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0
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436
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Answer: Answer: invalid --hwe parameter sequence error when doing QC
14 months ago by chrchang523 10k
0
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0
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1.1k
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Answer: Answer: make BED file from existing BIM and FAM files
14 months ago by chrchang523 10k
0
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1
reply
1.8k
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Comment: Comment: PLINK2 selecting variants based on INFO score
14 months ago by chrchang523 10k
0
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1
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1.8k
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Comment: Comment: PLINK2 selecting variants based on INFO score
14 months ago by chrchang523 10k
0
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1
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1.8k
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Comment: Comment: PLINK2 selecting variants based on INFO score
14 months ago by chrchang523 10k
1
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1
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2.3k
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Answer: Answer: VCF to Plink files
14 months ago by chrchang523 10k
2
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1
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764
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Answer: Answer: drop duplicate insertion deletions in VCF at same position while keeping one
14 months ago by chrchang523 10k
0
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0
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1.6k
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Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
15 months ago by chrchang523 10k
892 results • Page 1 of 18
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