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Answer: Answer: How can I keep INFO value when convert bgen to VCF by using plink2?
22 months ago by chrchang523 10k
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3.4k
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Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
23 months ago by chrchang523 10k
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1
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3.4k
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Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
23 months ago by chrchang523 10k
0
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1
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3.4k
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Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
23 months ago by chrchang523 10k
1
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0
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804
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Comment: Comment: Coded allele for plink --r command
23 months ago by chrchang523 10k
2
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1
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929
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Answer: Answer: Plink runtime when using "--extract"
23 months ago by chrchang523 10k
1
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1
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804
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Answer: Answer: Coded allele for plink --r command
23 months ago by chrchang523 10k
2
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0
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941
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Answer: Answer: Help with allele flip in plink
23 months ago by chrchang523 10k
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0
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857
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Comment: Comment: How to convert from csv to ped and map files?
23 months ago by chrchang523 10k
1
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0
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2.4k
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Comment: Comment: How to merge 20K single-sample VCFs *without* using plink or plink2?
23 months ago by chrchang523 10k
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1
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2.4k
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Comment: Comment: How to merge 20K single-sample VCFs *without* using plink or plink2?
23 months ago by chrchang523 10k
1
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1
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2.4k
views
Comment: Comment: How to merge 20K single-sample VCFs *without* using plink or plink2?
23 months ago by chrchang523 10k
2
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1
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2.4k
views
Comment: Comment: How to merge 20K single-sample VCFs *without* using plink or plink2?
23 months ago by chrchang523 10k
2
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0
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644
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Answer: Answer: Package for PCA on post-imputation dosage genotype data for GWAS (minimac/Michig
24 months ago by chrchang523 10k
2
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0
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770
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Answer: Answer: How to delete Duplicate snps in plink 1.9
24 months ago by chrchang523 10k
2
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0
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1.1k
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Answer: Answer: Bcftools equivalent of vcftools conversion to ped & map
24 months ago by chrchang523 10k
1
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1
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2.1k
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Comment: Comment: plink bim file stops at chrM
2.0 years ago by chrchang523 10k
1
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1
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2.1k
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Comment: Comment: plink bim file stops at chrM
2.0 years ago by chrchang523 10k
3
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7.0k
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Answer: Answer: How to determine percentage missing genotypes in VCF/BCF?
2.0 years ago by chrchang523 10k
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1
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2.1k
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Comment: Comment: plink bim file stops at chrM
2.0 years ago by chrchang523 10k
0
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1
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2.1k
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Answer: Answer: plink bim file stops at chrM
2.0 years ago by chrchang523 10k
1
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0
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668
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Answer: Answer: Plink v1.9: Order of SNPs when extracting from file
2.0 years ago by chrchang523 10k
1
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0
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3.3k
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Comment: Comment: How to generate plink map files
2.0 years ago by chrchang523 10k
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1
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1.1k
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Answer: Answer: Adding additional covariates to plink logistic regression model on HLA returns p
2.0 years ago by chrchang523 10k
1
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0
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1.6k
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Comment: Comment: Plink: .vcf to .ped issue (problem with polyploidy?)
2.1 years ago by chrchang523 10k
2
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0
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609
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Answer: Answer: Accessing TopMed or 1000g ancestry data (GRCh38)
2.1 years ago by chrchang523 10k
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0
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829
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Comment: Comment: How to preserve alleles across plink operations?
2.1 years ago by chrchang523 10k
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1
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829
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Answer: Answer: How to preserve alleles across plink operations?
2.1 years ago by chrchang523 10k
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0
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510
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Answer: Answer: Additive and dominance components for .ped file
2.1 years ago by chrchang523 10k
2
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0
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918
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Answer: Answer: where to find GRCh38 for 1000 Genomes
2.1 years ago by chrchang523 10k
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0
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5.4k
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Comment: Comment: relationship between PI_HAT and --king-cutoff coefficient?
2.1 years ago by chrchang523 10k
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0
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599
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Answer: Answer: Removing specific line number in Plink Map/Ped files
2.1 years ago by chrchang523 10k
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0
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1.6k
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Comment: Comment: Converting PLINK files to VCF
2.1 years ago by chrchang523 10k
0
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1
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1.6k
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Comment: Comment: Converting PLINK files to VCF
2.1 years ago by chrchang523 10k
0
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0
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13k
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Comment: Comment: plink2 bgen to vcf ukbiobank
2.1 years ago by chrchang523 10k
0
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1
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3.4k
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Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.1 years ago by chrchang523 10k
2
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0
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1.1k
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Answer: Answer: How to input multiple bed files in plink
2.1 years ago by chrchang523 10k
0
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0
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596
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Comment: Comment: Merge only bim files with plink
2.2 years ago by chrchang523 10k
0
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0
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3.4k
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Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.2 years ago by chrchang523 10k
3
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1
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874
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Answer: Answer: PLINK .ped file from vcf file with 2 alleles
2.2 years ago by chrchang523 10k
2
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1
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2.4k
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Answer: Answer: (Plink) Sex as a covariate: What's the coding for male/female?
2.2 years ago by chrchang523 10k
0
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1
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3.4k
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Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.2 years ago by chrchang523 10k
0
votes
3
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3.4k
views
Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.2 years ago by chrchang523 10k
0
votes
1
reply
3.4k
views
Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.2 years ago by chrchang523 10k
0
votes
1
reply
3.4k
views
Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.2 years ago by chrchang523 10k
0
votes
1
reply
3.4k
views
Comment: Comment: Computing allele frequencies per individual for a set of SNPs in PLINK
2.2 years ago by chrchang523 10k
0
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0
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579
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Answer: Answer: ".glm.firth.hybrid" output file in plink2 does not give correct CASE_ALLELE_CT v
2.2 years ago by chrchang523 10k
0
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2
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3.4k
views
Answer: Answer: Computing allele frequencies per individual for a set of SNPs in PLINK
2.2 years ago by chrchang523 10k
0
votes
0
replies
1.5k
views
Comment: Comment: Plink Error: --recode does not yet support multipass recoding of very large file
2.2 years ago by chrchang523 10k
0
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1
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1.5k
views
Comment: Comment: Plink Error: --recode does not yet support multipass recoding of very large file
2.2 years ago by chrchang523 10k
896 results • Page 3 of 18
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