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Answer: Answer: Plink Error: --recode does not yet support multipass recoding of very large file
2.2 years ago by chrchang523 10k
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572
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Answer: Answer: Merging more than two files with plink
2.3 years ago by chrchang523 10k
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Answer: Answer: how to convert from hap/legend to VCF
2.3 years ago by chrchang523 10k
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4.5k
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Answer: Answer: Plink 2 user error converting .bgen to bcf
2.3 years ago by chrchang523 10k
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815
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Answer: Answer: Multiple samples in PLINK
2.3 years ago by chrchang523 10k
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721
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Answer: Answer: plink vcf
2.3 years ago by chrchang523 10k
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Answer: Answer: Change ALT/REF allele in plink
2.4 years ago by chrchang523 10k
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1.3k
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Answer: Answer: Plink2.0 unrecognized flag: --het
2.4 years ago by chrchang523 10k
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920
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Answer: Answer: Use plink filter --geno on cases and controls separately, within current analys
2.4 years ago by chrchang523 10k
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1.2k
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Comment: Comment: Plink Error
2.4 years ago by chrchang523 10k
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1.2k
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Answer: Answer: Plink Error
2.4 years ago by chrchang523 10k
1
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6.8k
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Comment: Comment: Why would you need to specify `--keep-allele-order` and `--a2-allele` when writi
2.4 years ago by chrchang523 10k
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620
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Comment: Comment: SNP extraction
2.5 years ago by chrchang523 10k
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1.8k
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Answer: Answer: deflated QQ plot but lambda >1
2.5 years ago by chrchang523 10k
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1.3k
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Comment: Comment: How to import dosage information to plink binary files?
2.6 years ago by chrchang523 10k
3
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3.9k
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Answer: Answer: Can someone explain PLINK allele REF/ALT management strategy?
2.6 years ago by chrchang523 10k
1
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5.8k
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Comment: Comment: PLINK dosage data - convert and/or read in R
2.6 years ago by chrchang523 10k
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1
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2.8k
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Answer: Answer: PLINK basic command line usage
2.7 years ago by chrchang523 10k
4
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833
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Answer: Answer: Plink genome flag error
2.7 years ago by chrchang523 10k
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1.7k
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Answer: Answer: Plink --merge-list only outputting fam
2.7 years ago by chrchang523 10k
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639
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Answer: Answer: Data Storage in Plink Format
2.7 years ago by chrchang523 10k
2
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0
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871
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Answer: Answer: Filter duplicate ID from PLINK file
2.8 years ago by chrchang523 10k
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2.1k
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Comment: Comment: PLINK --lasso Issue ('Warning: No Phenotypes Present') even with a covar file i
2.8 years ago by chrchang523 10k
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1
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2.1k
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Comment: Comment: PLINK --lasso Issue ('Warning: No Phenotypes Present') even with a covar file i
2.8 years ago by chrchang523 10k
0
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1
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2.1k
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Answer: Answer: PLINK --lasso Issue ('Warning: No Phenotypes Present') even with a covar file i
2.8 years ago by chrchang523 10k
0
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1
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3.2k
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Comment: Comment: Problem merging data in plink
2.8 years ago by chrchang523 10k
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1
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3.2k
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Comment: Comment: Problem merging data in plink
2.8 years ago by chrchang523 10k
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1
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3.2k
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Comment: Comment: Problem merging data in plink
2.8 years ago by chrchang523 10k
1
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1
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3.2k
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Answer: Answer: Problem merging data in plink
2.8 years ago by chrchang523 10k
0
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0
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8.8k
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Comment: Comment: Calculate population allele frequencies from a vcf file including multiple popul
2.8 years ago by chrchang523 10k
1
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1
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1.5k
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Comment: Comment: Merge files in Plink
2.8 years ago by chrchang523 10k
1
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1
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1.5k
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Comment: Comment: Merge files in Plink
2.8 years ago by chrchang523 10k
1
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1
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1.5k
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Answer: Answer: Merge files in Plink
2.8 years ago by chrchang523 10k
0
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1
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8.8k
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Comment: Comment: Calculate population allele frequencies from a vcf file including multiple popul
2.8 years ago by chrchang523 10k
1
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0
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1.7k
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Comment: Comment: formatting error: Calculate LD matrix from bgen file
2.8 years ago by chrchang523 10k
0
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0
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1.6k
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Answer: Answer: extract list of SNPs from multiple chr{1:22}.bgen files using plink2
2.8 years ago by chrchang523 10k
0
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1
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1.7k
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Answer: Answer: formatting error: Calculate LD matrix from bgen file
2.8 years ago by chrchang523 10k
1
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1
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2.9k
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Comment: Comment: PLINK ASSOC : Skipping --assoc/--model since less than two phenotypes are prese
2.8 years ago by chrchang523 10k
0
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1
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2.9k
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Answer: Answer: PLINK ASSOC : Skipping --assoc/--model since less than two phenotypes are prese
2.8 years ago by chrchang523 10k
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0
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1.1k
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Comment: Comment: individual-level allele frequencies
2.8 years ago by chrchang523 10k
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0
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1.0k
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Answer: Answer: How to obtain subpopulation specific allelic variants from a .vcf file using PLI
2.8 years ago by chrchang523 10k
0
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0
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1.8k
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Answer: Answer: PLINK Error: Too many distinct nonstandard chromosome/contig names.
2.8 years ago by chrchang523 10k
1
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0
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2.0k
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Comment: Comment: How to perform logistic regression (with option “firth-fallback”) in Plink2
2.9 years ago by chrchang523 10k
0
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1
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2.0k
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Comment: Comment: How to perform logistic regression (with option “firth-fallback”) in Plink2
2.9 years ago by chrchang523 10k
2
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0
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1.1k
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Answer: Answer: How do you update plink bim file to remove 'chr' string?
2.9 years ago by chrchang523 10k
1
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1
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1.3k
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Comment: Comment: PCA for combined set
2.9 years ago by chrchang523 10k
2
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1
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1.3k
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Answer: Answer: PCA for combined set
2.9 years ago by chrchang523 10k
2
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0
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624
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Answer: Answer: What is the logical operator for plink2 --extract-if-info?
2.9 years ago by chrchang523 10k
1
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1
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1.2k
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Comment: Comment: separate multi-alleles from bi-alleles
2.9 years ago by chrchang523 10k
1
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0
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737
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Answer: Answer: How could I calculate r2 values between a list of SNPs with PLINK?
2.9 years ago by chrchang523 10k
896 results • Page 4 of 18
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