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Comment: Comment: WGCNA
24 months ago by jv ★ 1.9k
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4.2k
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Comment: Comment: Running AUCell on integrated scRNAseq data
2.0 years ago by jv ★ 1.9k
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1.1k
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Comment: Comment: flowCore biexponential transformation
2.0 years ago by jv ★ 1.9k
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915
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Answer: Answer: Analysis and results microarray data for research
2.0 years ago by jv ★ 1.9k
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0
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3.2k
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Comment: Comment: How to use R installed by conda instead of it installed by apt on Ubuntu
2.4 years ago by jv ★ 1.9k
1
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0
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1.4k
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Answer: Answer: Is it possible to add a dendrogram as a top annotation using ComplexHeatmap ?
2.4 years ago by jv ★ 1.9k
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0
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848
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Comment: Comment: Seurat: How to get all genes name of a cell ?
2.4 years ago by jv ★ 1.9k
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1.4k
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Comment: Comment: Biological replicates in RNA-seq
2.4 years ago by jv ★ 1.9k
1
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1
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1.1k
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Comment: Comment: highlight regions in a dot-plot?
2.4 years ago by jv ★ 1.9k
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0
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915
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Comment: Comment: How to find marker genes for whole tissue from several different sub-tissue scRN
2.5 years ago by jv ★ 1.9k
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0
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969
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Comment: Comment: Co-Expression of All Genes with a Single Gene (Spatial Transcriptomics)
2.5 years ago by jv ★ 1.9k
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2.3k
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Comment: Comment: Cibersort phenotpe file to create signature matrix
2.5 years ago by jv ★ 1.9k
1
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0
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935
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Comment: Comment: DESeq2 with multiple factors
2.5 years ago by jv ★ 1.9k
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6.4k
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Comment: Comment: Removing specific cluster based on one gene down regulation
2.5 years ago by jv ★ 1.9k
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0
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7.0k
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Comment: Comment: active.ident slot present but not recognized in seurat object
2.5 years ago by jv ★ 1.9k
0
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0
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7.0k
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Comment: Comment: active.ident slot present but not recognized in seurat object
2.5 years ago by jv ★ 1.9k
1
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1
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7.0k
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Answer: Answer: active.ident slot present but not recognized in seurat object
2.5 years ago by jv ★ 1.9k
0
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0
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1.3k
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Answer: Answer: GSEA with duplicate sample
2.5 years ago by jv ★ 1.9k
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1
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1.3k
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Comment: Comment: Batch effects and what to do about them
2.5 years ago by jv ★ 1.9k
0
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1
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5.1k
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Comment: Comment: Adding 'gene_name' attribute to each row of GTF/GFF file (missing for CDS, trans
2.5 years ago by jv ★ 1.9k
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1
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1.5k
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Comment: Comment: desgin a primer for CDS
2.5 years ago by jv ★ 1.9k
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0
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6.5k
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Comment: Comment: Need to specify "--chemistry" argument in "cellranger count"
2.5 years ago by jv ★ 1.9k
2
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2
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2.1k
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Comment: Comment: rRNA contaminants RNASeq
2.5 years ago by jv ★ 1.9k
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0
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849
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Comment: Comment: MEME - minimum of sequence for significative motif result
2.5 years ago by jv ★ 1.9k
1
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1
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3.4k
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Comment: Comment: scRNA-seq: How does cell number in clusters affect the number of DE genes?
2.5 years ago by jv ★ 1.9k
1
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1
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3.4k
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Comment: Comment: scRNA-seq: How does cell number in clusters affect the number of DE genes?
2.5 years ago by jv ★ 1.9k
1
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0
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3.1k
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Comment: Comment: Problems with the input (from TPM) to run the WGCNA
2.5 years ago by jv ★ 1.9k
1
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1
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3.5k
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Comment: Comment: annotation_names_side does not work in complexheatmap package
2.5 years ago by jv ★ 1.9k
0
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0
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758
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Answer: Answer: Please help with edgeR script
2.5 years ago by jv ★ 1.9k
0
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1
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2.6k
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Comment: Comment: Same correlation values obtained at different soft threshold powers in WGCNA sig
2.5 years ago by jv ★ 1.9k
2
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1
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3.5k
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Answer: Answer: annotation_names_side does not work in complexheatmap package
2.5 years ago by jv ★ 1.9k
1
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0
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1.6k
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Comment: Comment: Right assay and slot for the extraction of normalized data after "sct normalizat
2.5 years ago by jv ★ 1.9k
1
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2
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1.2k
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Comment: Comment: Spatial transcriptiome analysis
2.5 years ago by jv ★ 1.9k
0
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0
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1.8k
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Comment: Comment: PSEUDOBULK HELP-DE Expression in scRNA-seq
2.5 years ago by jv ★ 1.9k
0
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0
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815
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Comment: Comment: Pair files
2.6 years ago by jv ★ 1.9k
1
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1
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1.8k
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Answer: Answer: PSEUDOBULK HELP-DE Expression in scRNA-seq
2.6 years ago by jv ★ 1.9k
0
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0
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1.3k
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Comment: Comment: GO-term analysis interpretation
2.6 years ago by jv ★ 1.9k
0
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0
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2.6k
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Answer: Answer: Issue in installing any package in R
2.6 years ago by jv ★ 1.9k
1
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2
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2.2k
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Comment: Comment: Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
2.6 years ago by jv ★ 1.9k
0
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1
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1.7k
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Comment: Comment: How to "guess" the transformation based on already-transformed, "normalized coun
2.6 years ago by jv ★ 1.9k
0
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0
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2.2k
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Comment: Comment: How to extract the DNA sequence 1000 bp around the Transcription start site (TSS
2.6 years ago by jv ★ 1.9k
0
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1
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2.2k
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Comment: Comment: How to extract the DNA sequence 1000 bp around the Transcription start site (TSS
2.6 years ago by jv ★ 1.9k
2
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1
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1.5k
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Comment: Comment: normalize coordinates to the same length
2.6 years ago by jv ★ 1.9k
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1
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1.0k
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Comment: Comment: GOseq for Listeria monocytogenes
2.6 years ago by jv ★ 1.9k
0
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0
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1.3k
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Comment: Comment: Gene family classification using RNA-seq data
2.6 years ago by jv ★ 1.9k
0
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1
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1.3k
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Comment: Comment: Gene family classification using RNA-seq data
2.6 years ago by jv ★ 1.9k
0
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0
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39k
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Comment: Comment: How to get subset of a Seurat object based on metadata?
2.6 years ago by jv ★ 1.9k
0
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1
reply
39k
views
Comment: Comment: How to get subset of a Seurat object based on metadata?
2.6 years ago by jv ★ 1.9k
0
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1
reply
39k
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Answer: Answer: How to get subset of a Seurat object based on metadata?
2.6 years ago by jv ★ 1.9k
0
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0
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5.8k
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Comment: Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
2.6 years ago by jv ★ 1.9k
383 results • Page 3 of 8
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