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Comment: Comment: quality control scRNAseq
18 months ago by jv ★ 1.9k
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Answer: Answer: quality control scRNAseq
18 months ago by jv ★ 1.9k
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Comment: Comment: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
18 months ago by jv ★ 1.9k
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Comment: Comment: Re. Batch effect correction in data with a design matrix without full rank
18 months ago by jv ★ 1.9k
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Job: Data scientist/Bioinformatician University of Wisconsin Biotechnology Center Bioinformatics Resource Center
data-scientist
updated 18 months ago by 45k • written 18 months ago by ★ 1.9k
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Comment: Comment: Can I perform a Functional Enrichment Analysis on a specific list of pre-defined
18 months ago by jv ★ 1.9k
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Comment: Comment: WGCNA for co-expression network analysis
18 months ago by jv ★ 1.9k
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
18 months ago by jv ★ 1.9k
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
18 months ago by jv ★ 1.9k
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Answer: Answer: Single cell rna sequencing analysis using R help
18 months ago by jv ★ 1.9k
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Comment: Comment: Single cell rna sequencing analysis using R help
18 months ago by jv ★ 1.9k
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1.0k
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
18 months ago by jv ★ 1.9k
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1.0k
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
18 months ago by jv ★ 1.9k
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1
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2.6k
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
18 months ago by jv ★ 1.9k
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0
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2.8k
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Answer: Answer: Filter out doublet and Clustering
18 months ago by jv ★ 1.9k
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1.1k
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Comment: Comment: Choosing right GSEA background gene sets
18 months ago by jv ★ 1.9k
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807
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Comment: Comment: Deseq2 shows differential expression while TPM values are not significantly diff
18 months ago by jv ★ 1.9k
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645
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Comment: Comment: Orthomcl Pairs
19 months ago by jv ★ 1.9k
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927
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Comment: Comment: WGCNA from Salmon Output
19 months ago by jv ★ 1.9k
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927
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Comment: Comment: WGCNA from Salmon Output
19 months ago by jv ★ 1.9k
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994
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Comment: Comment: Limma - normalizing gene expression data from multiple SRA experiments
19 months ago by jv ★ 1.9k
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994
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Comment: Comment: Limma - normalizing gene expression data from multiple SRA experiments
19 months ago by jv ★ 1.9k
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1.5k
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Comment: Comment: How do I get utr transcript coordinates?
19 months ago by jv ★ 1.9k
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861
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Comment: Comment: Getting less DE genes when incorporating all samples
19 months ago by jv ★ 1.9k
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Comment: Comment: GO and KEGG
19 months ago by jv ★ 1.9k
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975
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Comment: Comment: Why am I receiving an error with RUVg in RUVseq
19 months ago by jv ★ 1.9k
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1.5k
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Comment: Comment: Illumina NextSeq 500 Read Length
19 months ago by jv ★ 1.9k
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
19 months ago by jv ★ 1.9k
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1.2k
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
19 months ago by jv ★ 1.9k
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1.1k
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Answer: Answer: Significance of P value in GSEA
19 months ago by jv ★ 1.9k
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1.9k
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Answer: Answer: How to get raw mRNA count from Seurat converted anndata
19 months ago by jv ★ 1.9k
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1.6k
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Comment: Comment: GO and KEGG
19 months ago by jv ★ 1.9k
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1
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1.6k
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Comment: Comment: GO and KEGG
19 months ago by jv ★ 1.9k
2
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1
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1.5k
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Comment: Comment: Illumina NextSeq 500 Read Length
19 months ago by jv ★ 1.9k
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536
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Comment: Comment: Retrieving gene expression from tabula muris in R
19 months ago by jv ★ 1.9k
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1.7k
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
19 months ago by jv ★ 1.9k
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1.7k
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
19 months ago by jv ★ 1.9k
1
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0
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926
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Answer: Answer: Need a spatial transcriptomics cancer data
19 months ago by jv ★ 1.9k
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1.6k
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Answer: Answer: GTEx TPMs Vs normalized data
19 months ago by jv ★ 1.9k
2
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1
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1.6k
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Answer: Answer: GO and KEGG
19 months ago by jv ★ 1.9k
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1
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1.6k
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Comment: Comment: GTEx TPMs Vs normalized data
19 months ago by jv ★ 1.9k
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714
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Answer: Answer: GEO database
19 months ago by jv ★ 1.9k
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372
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scRNA-seq atlas differential pathway activation
scRNA-seq
19 months ago by jv ★ 1.9k
2
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0
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1.1k
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Answer: Answer: Get the gene functions specific for clusters (RNA seq)
19 months ago by jv ★ 1.9k
2
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1
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1.3k
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Comment: Comment: Annotation of Complex Heatmap
20 months ago by jv ★ 1.9k
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1.3k
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Comment: Comment: Annotation of Complex Heatmap
20 months ago by jv ★ 1.9k
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2
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1.3k
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Comment: Comment: Annotation of Complex Heatmap
20 months ago by jv ★ 1.9k
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788
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Comment: Comment: Gene Ontonology analysis of DEGs from rice genome
20 months ago by jv ★ 1.9k
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899
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Comment: Comment: Values EXCEEDS the original data range after batch effect correction.
updated 20 months ago by 45k • written 20 months ago by ★ 1.9k
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2.7k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
20 months ago by jv ★ 1.9k
383 results • Page 1 of 8
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