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Comment: Comment: quality control scRNAseq
9 months ago by jv ★ 1.8k
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563
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Answer: Answer: quality control scRNAseq
9 months ago by jv ★ 1.8k
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648
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Comment: Comment: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
9 months ago by jv ★ 1.8k
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609
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Comment: Comment: Re. Batch effect correction in data with a design matrix without full rank
9 months ago by jv ★ 1.8k
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Job: Data scientist/Bioinformatician University of Wisconsin Biotechnology Center Bioinformatics Resource Center
data-scientist
updated 9 months ago by 44k • written 9 months ago by ★ 1.8k
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Comment: Comment: Can I perform a Functional Enrichment Analysis on a specific list of pre-defined
9 months ago by jv ★ 1.8k
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461
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Comment: Comment: WGCNA for co-expression network analysis
9 months ago by jv ★ 1.8k
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1.5k
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
9 months ago by jv ★ 1.8k
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611
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
9 months ago by jv ★ 1.8k
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662
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Answer: Answer: Single cell rna sequencing analysis using R help
9 months ago by jv ★ 1.8k
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662
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Comment: Comment: Single cell rna sequencing analysis using R help
9 months ago by jv ★ 1.8k
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611
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
9 months ago by jv ★ 1.8k
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1
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611
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Comment: Comment: How to normalise RNA seq data from two independent experiments to the same scale
9 months ago by jv ★ 1.8k
0
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1
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1.5k
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
9 months ago by jv ★ 1.8k
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0
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1.6k
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Answer: Answer: Filter out doublet and Clustering
9 months ago by jv ★ 1.8k
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619
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Comment: Comment: Choosing right GSEA background gene sets
9 months ago by jv ★ 1.8k
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524
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Comment: Comment: Deseq2 shows differential expression while TPM values are not significantly diff
9 months ago by jv ★ 1.8k
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434
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Comment: Comment: Orthomcl Pairs
9 months ago by jv ★ 1.8k
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542
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Comment: Comment: WGCNA from Salmon Output
9 months ago by jv ★ 1.8k
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542
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Comment: Comment: WGCNA from Salmon Output
9 months ago by jv ★ 1.8k
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599
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Comment: Comment: Limma - normalizing gene expression data from multiple SRA experiments
9 months ago by jv ★ 1.8k
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599
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Comment: Comment: Limma - normalizing gene expression data from multiple SRA experiments
9 months ago by jv ★ 1.8k
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771
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Comment: Comment: How do I get utr transcript coordinates?
9 months ago by jv ★ 1.8k
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513
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Comment: Comment: Getting less DE genes when incorporating all samples
10 months ago by jv ★ 1.8k
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1.0k
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Comment: Comment: GO and KEGG
10 months ago by jv ★ 1.8k
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734
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Comment: Comment: Why am I receiving an error with RUVg in RUVseq
10 months ago by jv ★ 1.8k
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811
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Comment: Comment: Illumina NextSeq 500 Read Length
10 months ago by jv ★ 1.8k
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647
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
10 months ago by jv ★ 1.8k
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647
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Comment: Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
10 months ago by jv ★ 1.8k
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0
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698
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Answer: Answer: Significance of P value in GSEA
10 months ago by jv ★ 1.8k
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1.1k
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Answer: Answer: How to get raw mRNA count from Seurat converted anndata
10 months ago by jv ★ 1.8k
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0
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1.0k
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Comment: Comment: GO and KEGG
10 months ago by jv ★ 1.8k
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1
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1.0k
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Comment: Comment: GO and KEGG
10 months ago by jv ★ 1.8k
2
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1
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811
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Comment: Comment: Illumina NextSeq 500 Read Length
10 months ago by jv ★ 1.8k
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0
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373
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Comment: Comment: Retrieving gene expression from tabula muris in R
10 months ago by jv ★ 1.8k
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1.0k
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
10 months ago by jv ★ 1.8k
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2
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1.0k
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Comment: Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
10 months ago by jv ★ 1.8k
1
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0
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643
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Answer: Answer: Need a spatial transcriptomics cancer data
10 months ago by jv ★ 1.8k
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0
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614
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Answer: Answer: GTEx TPMs Vs normalized data
10 months ago by jv ★ 1.8k
2
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1
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1.0k
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Answer: Answer: GO and KEGG
10 months ago by jv ★ 1.8k
0
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1
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614
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Comment: Comment: GTEx TPMs Vs normalized data
10 months ago by jv ★ 1.8k
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375
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Answer: Answer: GEO database
10 months ago by jv ★ 1.8k
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269
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scRNA-seq atlas differential pathway activation
scRNA-seq
10 months ago by jv ★ 1.8k
2
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0
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612
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Answer: Answer: Get the gene functions specific for clusters (RNA seq)
10 months ago by jv ★ 1.8k
2
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1
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832
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Comment: Comment: Annotation of Complex Heatmap
10 months ago by jv ★ 1.8k
2
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0
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832
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Comment: Comment: Annotation of Complex Heatmap
10 months ago by jv ★ 1.8k
2
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2
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832
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Comment: Comment: Annotation of Complex Heatmap
10 months ago by jv ★ 1.8k
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1
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513
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Comment: Comment: Gene Ontonology analysis of DEGs from rice genome
10 months ago by jv ★ 1.8k
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596
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Comment: Comment: Values EXCEEDS the original data range after batch effect correction.
updated 10 months ago by 44k • written 10 months ago by ★ 1.8k
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1.7k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
10 months ago by jv ★ 1.8k
382 results • Page 1 of 8
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