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Comment: Comment: Running AUCell on integrated scRNAseq data
6 months ago by jv ★ 1.8k
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559
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Comment: Comment: flowCore biexponential transformation
6 months ago by jv ★ 1.8k
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476
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Answer: Answer: Analysis and results microarray data for research
6 months ago by jv ★ 1.8k
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1.6k
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Comment: Comment: How to use R installed by conda instead of it installed by apt on Ubuntu
11 months ago by jv ★ 1.8k
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0
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741
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Answer: Answer: Is it possible to add a dendrogram as a top annotation using ComplexHeatmap ?
11 months ago by jv ★ 1.8k
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462
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Comment: Comment: Seurat: How to get all genes name of a cell ?
11 months ago by jv ★ 1.8k
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0
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717
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Comment: Comment: Biological replicates in RNA-seq
12 months ago by jv ★ 1.8k
1
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1
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577
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Comment: Comment: highlight regions in a dot-plot?
12 months ago by jv ★ 1.8k
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0
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484
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Comment: Comment: How to find marker genes for whole tissue from several different sub-tissue scRN
12 months ago by jv ★ 1.8k
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0
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536
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Comment: Comment: Co-Expression of All Genes with a Single Gene (Spatial Transcriptomics)
12 months ago by jv ★ 1.8k
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0
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1.1k
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Comment: Comment: Cibersort phenotpe file to create signature matrix
12 months ago by jv ★ 1.8k
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482
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Comment: Comment: DESeq2 with multiple factors
12 months ago by jv ★ 1.8k
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2.7k
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Comment: Comment: Removing specific cluster based on one gene down regulation
12 months ago by jv ★ 1.8k
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0
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2.4k
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Comment: Comment: active.ident slot present but not recognized in seurat object
12 months ago by jv ★ 1.8k
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0
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2.4k
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Comment: Comment: active.ident slot present but not recognized in seurat object
12 months ago by jv ★ 1.8k
1
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1
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2.4k
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Answer: Answer: active.ident slot present but not recognized in seurat object
12 months ago by jv ★ 1.8k
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0
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674
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Answer: Answer: GSEA with duplicate sample
12 months ago by jv ★ 1.8k
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1
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735
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Comment: Comment: Batch effects and what to do about them
12 months ago by jv ★ 1.8k
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1
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2.5k
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Comment: Comment: Adding 'gene_name' attribute to each row of GTF/GFF file (missing for CDS, trans
12 months ago by jv ★ 1.8k
0
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1
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778
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Comment: Comment: desgin a primer for CDS
12 months ago by jv ★ 1.8k
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0
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3.8k
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Comment: Comment: Need to specify "--chemistry" argument in "cellranger count"
12 months ago by jv ★ 1.8k
2
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2
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1.1k
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Comment: Comment: rRNA contaminants RNASeq
12 months ago by jv ★ 1.8k
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0
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462
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Comment: Comment: MEME - minimum of sequence for significative motif result
12 months ago by jv ★ 1.8k
1
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1
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1.2k
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Comment: Comment: scRNA-seq: How does cell number in clusters affect the number of DE genes?
12 months ago by jv ★ 1.8k
1
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1
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1.2k
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Comment: Comment: scRNA-seq: How does cell number in clusters affect the number of DE genes?
12 months ago by jv ★ 1.8k
1
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0
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1.8k
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Comment: Comment: Problems with the input (from TPM) to run the WGCNA
13 months ago by jv ★ 1.8k
1
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1
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1.6k
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Comment: Comment: annotation_names_side does not work in complexheatmap package
13 months ago by jv ★ 1.8k
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0
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427
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Answer: Answer: Please help with edgeR script
13 months ago by jv ★ 1.8k
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1
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1.5k
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Comment: Comment: Same correlation values obtained at different soft threshold powers in WGCNA sig
13 months ago by jv ★ 1.8k
2
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1
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1.6k
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Answer: Answer: annotation_names_side does not work in complexheatmap package
13 months ago by jv ★ 1.8k
1
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0
replies
994
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Comment: Comment: Right assay and slot for the extraction of normalized data after "sct normalizat
13 months ago by jv ★ 1.8k
1
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2
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657
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Comment: Comment: Spatial transcriptiome analysis
13 months ago by jv ★ 1.8k
0
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0
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985
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Comment: Comment: PSEUDOBULK HELP-DE Expression in scRNA-seq
13 months ago by jv ★ 1.8k
0
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0
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505
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Comment: Comment: Pair files
13 months ago by jv ★ 1.8k
0
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1
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985
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Answer: Answer: PSEUDOBULK HELP-DE Expression in scRNA-seq
13 months ago by jv ★ 1.8k
0
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0
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734
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Comment: Comment: GO-term analysis interpretation
13 months ago by jv ★ 1.8k
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0
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1.4k
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Answer: Answer: Issue in installing any package in R
13 months ago by jv ★ 1.8k
1
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2
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1.2k
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Comment: Comment: Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
13 months ago by jv ★ 1.8k
0
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1
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992
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Comment: Comment: How to "guess" the transformation based on already-transformed, "normalized coun
13 months ago by jv ★ 1.8k
0
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0
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1.0k
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Comment: Comment: How to extract the DNA sequence 1000 bp around the Transcription start site (TSS
13 months ago by jv ★ 1.8k
0
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1
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1.0k
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Comment: Comment: How to extract the DNA sequence 1000 bp around the Transcription start site (TSS
13 months ago by jv ★ 1.8k
2
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1
reply
802
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Comment: Comment: normalize coordinates to the same length
13 months ago by jv ★ 1.8k
0
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1
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551
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Comment: Comment: GOseq for Listeria monocytogenes
13 months ago by jv ★ 1.8k
0
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0
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754
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Comment: Comment: Gene family classification using RNA-seq data
13 months ago by jv ★ 1.8k
0
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1
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754
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Comment: Comment: Gene family classification using RNA-seq data
13 months ago by jv ★ 1.8k
0
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0
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21k
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Comment: Comment: How to get subset of a Seurat object based on metadata?
13 months ago by jv ★ 1.8k
0
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1
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21k
views
Comment: Comment: How to get subset of a Seurat object based on metadata?
13 months ago by jv ★ 1.8k
0
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1
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21k
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Answer: Answer: How to get subset of a Seurat object based on metadata?
13 months ago by jv ★ 1.8k
0
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0
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2.8k
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Comment: Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
13 months ago by jv ★ 1.8k
0
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0
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1.2k
views
Comment: Comment: normalized score for SpatialFeaturePlot
14 months ago by jv ★ 1.8k
382 results • Page 3 of 8
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