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Comment: Comment: Running AUCell on integrated scRNAseq data
6 months ago by jv ★ 1.8k
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547
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Comment: Comment: flowCore biexponential transformation
6 months ago by jv ★ 1.8k
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462
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Answer: Answer: Analysis and results microarray data for research
6 months ago by jv ★ 1.8k
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1.5k
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Comment: Comment: How to use R installed by conda instead of it installed by apt on Ubuntu
11 months ago by jv ★ 1.8k
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0
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727
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Answer: Answer: Is it possible to add a dendrogram as a top annotation using ComplexHeatmap ?
11 months ago by jv ★ 1.8k
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0
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457
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Comment: Comment: Seurat: How to get all genes name of a cell ?
11 months ago by jv ★ 1.8k
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0
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712
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Comment: Comment: Biological replicates in RNA-seq
11 months ago by jv ★ 1.8k
1
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1
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565
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Comment: Comment: highlight regions in a dot-plot?
11 months ago by jv ★ 1.8k
0
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0
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474
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Comment: Comment: How to find marker genes for whole tissue from several different sub-tissue scRN
11 months ago by jv ★ 1.8k
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0
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535
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Comment: Comment: Co-Expression of All Genes with a Single Gene (Spatial Transcriptomics)
11 months ago by jv ★ 1.8k
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0
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1.1k
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Comment: Comment: Cibersort phenotpe file to create signature matrix
11 months ago by jv ★ 1.8k
1
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0
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477
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Comment: Comment: DESeq2 with multiple factors
11 months ago by jv ★ 1.8k
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2.7k
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Comment: Comment: Removing specific cluster based on one gene down regulation
12 months ago by jv ★ 1.8k
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0
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2.4k
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Comment: Comment: active.ident slot present but not recognized in seurat object
12 months ago by jv ★ 1.8k
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0
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2.4k
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Comment: Comment: active.ident slot present but not recognized in seurat object
12 months ago by jv ★ 1.8k
1
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1
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2.4k
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Answer: Answer: active.ident slot present but not recognized in seurat object
12 months ago by jv ★ 1.8k
0
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0
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659
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Answer: Answer: GSEA with duplicate sample
12 months ago by jv ★ 1.8k
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1
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725
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Comment: Comment: Batch effects and what to do about them
12 months ago by jv ★ 1.8k
0
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1
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2.5k
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Comment: Comment: Adding 'gene_name' attribute to each row of GTF/GFF file (missing for CDS, trans
12 months ago by jv ★ 1.8k
0
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1
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771
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Comment: Comment: desgin a primer for CDS
12 months ago by jv ★ 1.8k
0
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0
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3.8k
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Comment: Comment: Need to specify "--chemistry" argument in "cellranger count"
12 months ago by jv ★ 1.8k
2
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2
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1.1k
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Comment: Comment: rRNA contaminants RNASeq
12 months ago by jv ★ 1.8k
0
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0
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455
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Comment: Comment: MEME - minimum of sequence for significative motif result
12 months ago by jv ★ 1.8k
1
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1
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1.2k
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Comment: Comment: scRNA-seq: How does cell number in clusters affect the number of DE genes?
12 months ago by jv ★ 1.8k
1
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1
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1.2k
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Comment: Comment: scRNA-seq: How does cell number in clusters affect the number of DE genes?
12 months ago by jv ★ 1.8k
1
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0
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1.8k
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Comment: Comment: Problems with the input (from TPM) to run the WGCNA
12 months ago by jv ★ 1.8k
1
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1
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1.6k
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Comment: Comment: annotation_names_side does not work in complexheatmap package
12 months ago by jv ★ 1.8k
0
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0
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425
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Answer: Answer: Please help with edgeR script
12 months ago by jv ★ 1.8k
0
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1
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1.4k
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Comment: Comment: Same correlation values obtained at different soft threshold powers in WGCNA sig
12 months ago by jv ★ 1.8k
2
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1
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1.6k
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Answer: Answer: annotation_names_side does not work in complexheatmap package
12 months ago by jv ★ 1.8k
1
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0
replies
978
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Comment: Comment: Right assay and slot for the extraction of normalized data after "sct normalizat
12 months ago by jv ★ 1.8k
1
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2
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651
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Comment: Comment: Spatial transcriptiome analysis
12 months ago by jv ★ 1.8k
0
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0
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971
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Comment: Comment: PSEUDOBULK HELP-DE Expression in scRNA-seq
12 months ago by jv ★ 1.8k
0
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0
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499
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Comment: Comment: Pair files
12 months ago by jv ★ 1.8k
0
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1
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971
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Answer: Answer: PSEUDOBULK HELP-DE Expression in scRNA-seq
12 months ago by jv ★ 1.8k
0
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0
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718
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Comment: Comment: GO-term analysis interpretation
12 months ago by jv ★ 1.8k
0
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0
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1.4k
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Answer: Answer: Issue in installing any package in R
13 months ago by jv ★ 1.8k
1
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2
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1.1k
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Comment: Comment: Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
13 months ago by jv ★ 1.8k
0
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1
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983
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Comment: Comment: How to "guess" the transformation based on already-transformed, "normalized coun
13 months ago by jv ★ 1.8k
0
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0
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1.0k
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Comment: Comment: How to extract the DNA sequence 1000 bp around the Transcription start site (TSS
13 months ago by jv ★ 1.8k
0
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1
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1.0k
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Comment: Comment: How to extract the DNA sequence 1000 bp around the Transcription start site (TSS
13 months ago by jv ★ 1.8k
2
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1
reply
791
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Comment: Comment: normalize coordinates to the same length
13 months ago by jv ★ 1.8k
0
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1
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543
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Comment: Comment: GOseq for Listeria monocytogenes
13 months ago by jv ★ 1.8k
0
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0
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745
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Comment: Comment: Gene family classification using RNA-seq data
13 months ago by jv ★ 1.8k
0
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1
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745
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Comment: Comment: Gene family classification using RNA-seq data
13 months ago by jv ★ 1.8k
0
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0
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21k
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Comment: Comment: How to get subset of a Seurat object based on metadata?
13 months ago by jv ★ 1.8k
0
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1
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21k
views
Comment: Comment: How to get subset of a Seurat object based on metadata?
13 months ago by jv ★ 1.8k
0
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1
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21k
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Answer: Answer: How to get subset of a Seurat object based on metadata?
13 months ago by jv ★ 1.8k
0
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0
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2.7k
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Comment: Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
13 months ago by jv ★ 1.8k
0
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0
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1.1k
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Comment: Comment: normalized score for SpatialFeaturePlot
13 months ago by jv ★ 1.8k
382 results • Page 3 of 8
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