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Comment: Comment: How does one access TCGA controlled data in AWS S3?
23 months ago by Zhenyu Zhang ★ 1.3k
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1
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2.0k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
23 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.7k
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Answer: Answer: different sample size between TCGA portal and TCGAbiolinks package
23 months ago by Zhenyu Zhang ★ 1.3k
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2
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2.0k
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Comment: Comment: How does one access TCGA controlled data in AWS S3?
23 months ago by Zhenyu Zhang ★ 1.3k
2
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1
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15k
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Answer: Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
23 months ago by Zhenyu Zhang ★ 1.3k
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866
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Answer: Answer: Problems encountered during the survival analysis with TCGA data
23 months ago by Zhenyu Zhang ★ 1.3k
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1.1k
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Comment: Comment: TPM RNA-seq data for differential expression analysis
23 months ago by Zhenyu Zhang ★ 1.3k
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0
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717
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Comment: Comment: Comparing multiple RNASeq studies
23 months ago by Zhenyu Zhang ★ 1.3k
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1
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2.1k
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Comment: Comment: Calculation of TMB on gene level
24 months ago by Zhenyu Zhang ★ 1.3k
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0
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862
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Comment: Comment: Understanding TCGA barcodes with dot in the fieldname
24 months ago by Zhenyu Zhang ★ 1.3k
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1.3k
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Answer: Answer: How to DESeq2 using miRNA data obtained using TCGAbiolinks
24 months ago by Zhenyu Zhang ★ 1.3k
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1.3k
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Comment: Comment: CNV calling
24 months ago by Zhenyu Zhang ★ 1.3k
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1
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8.5k
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Answer: Answer: What is the amount of sequencing data produced annually?
24 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.5k
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Comment: Comment: Is a PON necessary for tumor-normal matched Mutect2?
24 months ago by Zhenyu Zhang ★ 1.3k
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936
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Comment: Comment: TCGA gene expression quantitation batch information
2.0 years ago by Zhenyu Zhang ★ 1.3k
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0
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929
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Answer: Answer: What gene annotation was used for PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA
2.0 years ago by Zhenyu Zhang ★ 1.3k
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1
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1.5k
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Comment: Comment: Is a PON necessary for tumor-normal matched Mutect2?
2.0 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.4k
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Answer: Answer: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
2.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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921
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Comment: Comment: Differential gene expression with specif genes of interest
2.1 years ago by Zhenyu Zhang ★ 1.3k
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2.2k
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Comment: Comment: What database would have a list of gene names and aliases for yeast?
2.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.4k
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Answer: Answer: Batch correction of TCGA data from TCGAbiolinks and cBioPortal
2.1 years ago by Zhenyu Zhang ★ 1.3k
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1
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3.1k
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Comment: Comment: Merge BAM files from (totally) different references
2.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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2.1k
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Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
2.1 years ago by Zhenyu Zhang ★ 1.3k
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1
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2.1k
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Answer: Answer: Number of genes covered in WES
2.1 years ago by Zhenyu Zhang ★ 1.3k
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1
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2.8k
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Answer: Answer: DNBseq vs Illumina
2.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.1k
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Answer: Answer: Maf File Bar Code
2.1 years ago by Zhenyu Zhang ★ 1.3k
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1
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1.7k
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Answer: Answer: Ensembl Ref/alt allele discrepancy
2.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.4k
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Comment: Comment: Is it possible to interpret HGVS without transcript version number?
2.1 years ago by Zhenyu Zhang ★ 1.3k
1
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1
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1.4k
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Comment: Comment: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
2.1 years ago by Zhenyu Zhang ★ 1.3k
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1
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1.1k
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Comment: Comment: Send BAM files from server to cluster
2.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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3.0k
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Answer: Answer: Convert files made for b37 into hg19 human reference?
2.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.3k
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Comment: Comment: PON and germline files for Mutect2 Tumor-only mode
2.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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2.4k
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Comment: Comment: How can I generate a list of 100 genomic intervals from bam files?
2.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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2.0k
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Answer: Answer: Methylation Analysis - Missing Chromosome and Position Information for some CpG
2.1 years ago by Zhenyu Zhang ★ 1.3k
1
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0
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889
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Comment: Comment: Is it ok to do Indel realignment after removing subsets of reads?
2.2 years ago by Zhenyu Zhang ★ 1.3k
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0
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2.3k
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Comment: Comment: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
2.2 years ago by Zhenyu Zhang ★ 1.3k
2
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1
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889
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Answer: Answer: Is it ok to do Indel realignment after removing subsets of reads?
2.2 years ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.6k
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Comment: Comment: cBioPortal data with negative log2(FPKM + 1) values
2.2 years ago by Zhenyu Zhang ★ 1.3k
0
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1
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6.5k
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Answer: Answer: RNA-Seq analysis with Python
2.2 years ago by Zhenyu Zhang ★ 1.3k
1
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1
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2.3k
views
Answer: Answer: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
2.2 years ago by Zhenyu Zhang ★ 1.3k
1
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1
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3.8k
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Answer: Answer: laptop or PC for the bioinformatics jobs -- specification
2.2 years ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.4k
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Answer: Answer: Log-transformation of small values with good fold change and P values
2.2 years ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.6k
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Answer: Answer: cBioPortal data with negative log2(FPKM + 1) values
2.2 years ago by Zhenyu Zhang ★ 1.3k
0
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1
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839
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Answer: Answer: Multiple Tumor Count Files from a single Patient. How to merge or select?
2.2 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.4k
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Answer: Answer: TCGA methylation data analysis
2.3 years ago by Zhenyu Zhang ★ 1.3k
1
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0
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2.3k
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Comment: Comment: Where can I find a good RNA-seq dataset on cancer?
2.3 years ago by Zhenyu Zhang ★ 1.3k
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2
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2.3k
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Comment: Comment: Where can I find a good RNA-seq dataset on cancer?
2.3 years ago by Zhenyu Zhang ★ 1.3k
0
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0
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732
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Answer: Answer: Why sone miRNAs are not present in TCGA data
2.3 years ago by Zhenyu Zhang ★ 1.3k
0
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1
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2.3k
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Answer: Answer: Where can I find a good RNA-seq dataset on cancer?
2.3 years ago by Zhenyu Zhang ★ 1.3k
1
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0
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646
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Answer: Answer: transcript abundance, control and wgs
2.3 years ago by Zhenyu Zhang ★ 1.3k
301 results • Page 3 of 7
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