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Answer: Answer: Selecting clinical rows for repeated case IDs in TCGA-BRCA data
4 months ago by Zhenyu Zhang ★ 1.3k
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0
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854
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Comment: Comment: Genomic Data Portal (GDC) download a given a link file
4 months ago by Zhenyu Zhang ★ 1.3k
3
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1
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1.0k
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Answer: Answer: Analysing gene CNV from TCGA using TCGAbiolinks
5 months ago by Zhenyu Zhang ★ 1.3k
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0
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595
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Comment: Comment: Data Integrity (NCBI SRA and TCGA)
5 months ago by Zhenyu Zhang ★ 1.3k
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0
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645
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Comment: Comment: Reference Genome with decoy for RNAseq data processing
6 months ago by Zhenyu Zhang ★ 1.3k
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2
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42k
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Answer: Answer: Convert between RefSeq and Ensembl Transcript?
updated 7 months ago by 45k • written 7 months ago by ★ 1.3k
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997
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Comment: Comment: Which data to choose for correlation examination
7 months ago by Zhenyu Zhang ★ 1.3k
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0
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997
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Comment: Comment: Which data to choose for correlation examination
7 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.8k
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Comment: Comment: How to get Normal Samples from TCGA?
7 months ago by Zhenyu Zhang ★ 1.3k
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0
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810
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Comment: Comment: Does TCGA data only use host reads to make pre-processed data (CNV, Mutations st
7 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.4k
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Answer: Answer: Interpreting Varied Survival Times in TCGA-BRCA Data
7 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.3k
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Answer: Answer: Does anyone know how to transform the following transcript ID's from TCGA isofor
7 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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997
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Answer: Answer: Which data to choose for correlation examination
9 months ago by Zhenyu Zhang ★ 1.3k
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0
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933
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Comment: Comment: Getting an Expression Matrix from GDC Manifest File
9 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.3k
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Comment: Comment: Calculating TMB for TCGA data
9 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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933
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Answer: Answer: Getting an Expression Matrix from GDC Manifest File
9 months ago by Zhenyu Zhang ★ 1.3k
0
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2
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1.3k
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Answer: Answer: Calculating TMB for TCGA data
9 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.2k
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Answer: Answer: Is It Possible to Calculate Microsatellite Instability (MSI) Directly from MAF F
9 months ago by Zhenyu Zhang ★ 1.3k
1
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2
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1.3k
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How to install deconstructSigs in R
R
updated 10 months ago by 89k • written 10 months ago by ★ 1.3k
1
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1
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881
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
10 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.7k
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Comment: Comment: merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisatio
10 months ago by Zhenyu Zhang ★ 1.3k
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0
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351
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Strelka2 germline variants very different when pairing with different tumors?
germline
10 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.1k
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Answer: Answer: TCGA Methylation Beta and Gene Expression Help
10 months ago by Zhenyu Zhang ★ 1.3k
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0
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947
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Answer: Answer: Converting ICGC ids to TCGA format
10 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.7k
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Answer: Answer: merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisatio
10 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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629
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Answer: Answer: How to get full list of TCGA patients with mutation data
10 months ago by Zhenyu Zhang ★ 1.3k
1
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1
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881
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
10 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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1.1k
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Comment: Comment: TCGAbiolinks - fewer samples than expected
10 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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919
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Comment: Comment: How can studies compare microarray datas with rna-seq?
12 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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798
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Answer: Answer: ESTIMATE -tidyestimate package- tumour purity
12 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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936
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Answer: Answer: Methods for calculation of TMB via GENIE/cBioPortal data
12 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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900
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Answer: Answer: Obtaining clinical data from the TCGA data portal
13 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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904
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Comment: Comment: Not all available files shown in TCGA website.
13 months ago by Zhenyu Zhang ★ 1.3k
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0
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669
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Answer: Answer: Many MAF files in tcga case
13 months ago by Zhenyu Zhang ★ 1.3k
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0
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792
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Answer: Answer: Don't understand three modes of TCGA STAR 2-pass
13 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.1k
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Comment: Comment: TCGAbiolinks - fewer samples than expected
13 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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689
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Answer: Answer: How to get copy number gain/loss from TCGA gene_level_copy_number
14 months ago by Zhenyu Zhang ★ 1.3k
1
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0
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957
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Comment: Comment: single cell RNA sequencing and mitochondrial percent
14 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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913
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Comment: Comment: Strange peaks in normalized FPKM data
14 months ago by Zhenyu Zhang ★ 1.3k
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0
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681
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Answer: Answer: Converting GRCh38 30× 1000G data to GRCh37
14 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.0k
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Comment: Comment: Bulk converting superseded TCGA UUIDs
15 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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1.1k
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Comment: Comment: Clusters in Differential Gene Expression Data
15 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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856
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Answer: Answer: How to download BLCA.focal_score_by_genes.txt from GDC
15 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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1.6k
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Comment: Comment: How do I update the gene names of TCGA data correctly?
15 months ago by Zhenyu Zhang ★ 1.3k
0
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1
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1.0k
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Answer: Answer: Bulk converting superseded TCGA UUIDs
15 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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1.2k
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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
15 months ago by Zhenyu Zhang ★ 1.3k
1
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1
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1.2k
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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
15 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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1.1k
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Comment: Comment: Where to find old version of GATK best practice
16 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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1.1k
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Comment: Comment: Where to find old version of GATK best practice
16 months ago by Zhenyu Zhang ★ 1.3k
0
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4
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1.1k
views
Where to find old version of GATK best practice
gatk
16 months ago by Zhenyu Zhang ★ 1.3k
301 results • Page 1 of 7
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