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Answer: Answer: Differences between published differential gene expression results and own analy
23 days ago by Zhenyu Zhang ★ 1.3k
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658
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Answer: Answer: Selecting clinical rows for repeated case IDs in TCGA-BRCA data
5 months ago by Zhenyu Zhang ★ 1.3k
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1.1k
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Comment: Comment: Genomic Data Portal (GDC) download a given a link file
6 months ago by Zhenyu Zhang ★ 1.3k
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1.3k
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Answer: Answer: Analysing gene CNV from TCGA using TCGAbiolinks
6 months ago by Zhenyu Zhang ★ 1.3k
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683
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Comment: Comment: Data Integrity (NCBI SRA and TCGA)
7 months ago by Zhenyu Zhang ★ 1.3k
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757
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Comment: Comment: Reference Genome with decoy for RNAseq data processing
8 months ago by Zhenyu Zhang ★ 1.3k
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43k
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Answer: Answer: Convert between RefSeq and Ensembl Transcript?
updated 9 months ago by 45k • written 9 months ago by ★ 1.3k
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1.2k
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Comment: Comment: Which data to choose for correlation examination
9 months ago by Zhenyu Zhang ★ 1.3k
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1.2k
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Comment: Comment: Which data to choose for correlation examination
9 months ago by Zhenyu Zhang ★ 1.3k
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2.0k
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Comment: Comment: How to get Normal Samples from TCGA?
9 months ago by Zhenyu Zhang ★ 1.3k
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908
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Comment: Comment: Does TCGA data only use host reads to make pre-processed data (CNV, Mutations st
9 months ago by Zhenyu Zhang ★ 1.3k
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Answer: Answer: Interpreting Varied Survival Times in TCGA-BRCA Data
9 months ago by Zhenyu Zhang ★ 1.3k
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1.5k
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Answer: Answer: Does anyone know how to transform the following transcript ID's from TCGA isofor
9 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.2k
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Answer: Answer: Which data to choose for correlation examination
10 months ago by Zhenyu Zhang ★ 1.3k
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1.1k
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Comment: Comment: Getting an Expression Matrix from GDC Manifest File
11 months ago by Zhenyu Zhang ★ 1.3k
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1.5k
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Comment: Comment: Calculating TMB for TCGA data
11 months ago by Zhenyu Zhang ★ 1.3k
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1.1k
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Answer: Answer: Getting an Expression Matrix from GDC Manifest File
11 months ago by Zhenyu Zhang ★ 1.3k
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2
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1.5k
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Answer: Answer: Calculating TMB for TCGA data
11 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.3k
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Answer: Answer: Is It Possible to Calculate Microsatellite Instability (MSI) Directly from MAF F
11 months ago by Zhenyu Zhang ★ 1.3k
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2
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1.5k
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How to install deconstructSigs in R
R
updated 11 months ago by 89k • written 11 months ago by ★ 1.3k
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979
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
11 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.9k
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Comment: Comment: merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisatio
11 months ago by Zhenyu Zhang ★ 1.3k
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389
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Strelka2 germline variants very different when pairing with different tumors?
germline
11 months ago by Zhenyu Zhang ★ 1.3k
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Answer: Answer: TCGA Methylation Beta and Gene Expression Help
11 months ago by Zhenyu Zhang ★ 1.3k
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1.0k
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Answer: Answer: Converting ICGC ids to TCGA format
11 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.9k
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Answer: Answer: merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisatio
11 months ago by Zhenyu Zhang ★ 1.3k
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0
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700
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Answer: Answer: How to get full list of TCGA patients with mutation data
11 months ago by Zhenyu Zhang ★ 1.3k
1
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1
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979
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Comment: Comment: NCI Genomic Data Commons gdc-rnaseq-tool
11 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.3k
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Comment: Comment: TCGAbiolinks - fewer samples than expected
11 months ago by Zhenyu Zhang ★ 1.3k
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993
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Comment: Comment: How can studies compare microarray datas with rna-seq?
13 months ago by Zhenyu Zhang ★ 1.3k
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1
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886
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Answer: Answer: ESTIMATE -tidyestimate package- tumour purity
13 months ago by Zhenyu Zhang ★ 1.3k
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1.0k
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Answer: Answer: Methods for calculation of TMB via GENIE/cBioPortal data
14 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.0k
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Answer: Answer: Obtaining clinical data from the TCGA data portal
14 months ago by Zhenyu Zhang ★ 1.3k
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1
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980
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Comment: Comment: Not all available files shown in TCGA website.
15 months ago by Zhenyu Zhang ★ 1.3k
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728
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Answer: Answer: Many MAF files in tcga case
15 months ago by Zhenyu Zhang ★ 1.3k
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0
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887
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Answer: Answer: Don't understand three modes of TCGA STAR 2-pass
15 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.3k
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Comment: Comment: TCGAbiolinks - fewer samples than expected
15 months ago by Zhenyu Zhang ★ 1.3k
0
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0
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762
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Answer: Answer: How to get copy number gain/loss from TCGA gene_level_copy_number
15 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.1k
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Comment: Comment: single cell RNA sequencing and mitochondrial percent
16 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.0k
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Comment: Comment: Strange peaks in normalized FPKM data
16 months ago by Zhenyu Zhang ★ 1.3k
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0
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761
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Answer: Answer: Converting GRCh38 30× 1000G data to GRCh37
16 months ago by Zhenyu Zhang ★ 1.3k
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1.2k
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Comment: Comment: Bulk converting superseded TCGA UUIDs
16 months ago by Zhenyu Zhang ★ 1.3k
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1.2k
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Comment: Comment: Clusters in Differential Gene Expression Data
16 months ago by Zhenyu Zhang ★ 1.3k
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0
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911
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Answer: Answer: How to download BLCA.focal_score_by_genes.txt from GDC
16 months ago by Zhenyu Zhang ★ 1.3k
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1.8k
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Comment: Comment: How do I update the gene names of TCGA data correctly?
16 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.2k
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Answer: Answer: Bulk converting superseded TCGA UUIDs
16 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.3k
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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
16 months ago by Zhenyu Zhang ★ 1.3k
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1
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1.3k
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Comment: Comment: How to Convert CNV Data to CNA Format for Reproducing Results with the Padma Pac
17 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.1k
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Comment: Comment: Where to find old version of GATK best practice
17 months ago by Zhenyu Zhang ★ 1.3k
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0
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1.1k
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Comment: Comment: Where to find old version of GATK best practice
17 months ago by Zhenyu Zhang ★ 1.3k
302 results • Page 1 of 7
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