Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
0
replies
1.1k
views
Comment:
Comment: The GDC Legacy Archive is retiring soon.
4 days ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
520
views
Comment:
Comment: How to access TCGA samples that were treated with a specific drug?
4 days ago by
Zhenyu Zhang
★ 1.2k
1
vote
2
replies
1.1k
views
News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
4 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
983
views
Comment:
Comment: Method to detect genome doubling
21 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
307
views
Comment:
Comment: Are GeneExpression Subtype annotations removed from TCGA-GBM?
26 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
197
views
Answer:
Answer: Human Methylation Infinum Bead - probe to gene mapping
28 days ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
557
views
Answer:
Answer: Artificial deletion in bam
4 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
374
views
Answer:
Answer: Help with finding Genomic coordinates and exon they belong to
4 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
253
views
Answer:
Answer: Quantify the junction abundance?
4 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
404
views
Answer:
Answer: lncRNA from TCGA
4 weeks ago by
Zhenyu Zhang
★ 1.2k
2
votes
0
replies
334
views
Answer:
Answer: Can I have multiple active GDC download tokens?
5 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
284
views
Answer:
Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
7 weeks ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
306
views
Answer:
Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
7 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
178
views
Forum:
What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc
tcga
genomics-data-commons
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
1.5k
views
Answer:
Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
9 weeks ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
320
views
Answer:
Answer: TCGA metadata intersection
10 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
237
views
Comment:
Comment: How to map CPTAC digital pathology slides to sample ID and metadata
10 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
322
views
Answer:
Answer: How to find clinical data for TARGET AML
10 weeks ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
491
views
Comment:
Comment: How to identify biallelic mutations called using WES data?
10 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
711
views
Comment:
Comment: TCGA Biospecimens Slides Extraction
10 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
711
views
Comment:
Comment: TCGA Biospecimens Slides Extraction
11 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
711
views
Comment:
Comment: TCGA Biospecimens Slides Extraction
11 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
400
views
Comment:
Comment: Normalization of combined normal and tumor tissue samples from GTEx and TCGA pri
12 weeks ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
545
views
Answer:
Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
494
views
Comment:
Comment: Should centering and scaling be done on methylation beta values for principal co
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
933
views
Comment:
Comment: Is it possible to access the code of a bioinformatics article?
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
933
views
Answer:
Answer: Is it possible to access the code of a bioinformatics article?
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
723
views
Comment:
Comment: Manhattan Plot
3 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
473
views
Comment:
Comment: Is it possible to bulk-download gene expression + methylation data for a specifi
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
779
views
Comment:
Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
779
views
Comment:
Comment: Correlate number of cells with gene expression of one gene in scRNA Seq
3 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
720
views
Comment:
Comment: Understanding gene level copy number data from TCGAbiolinks
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
497
views
Answer:
Answer: Help doing differential expression analysis -experimental design and gProfiler T
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
445
views
Answer:
Answer: Diferences between TCGAbiolinks and cBioportal
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
565
views
Comment:
Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
486
views
Comment:
Comment: Appropriate genome reference for converting TCGA VCF files to MAF
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
486
views
Comment:
Comment: Appropriate genome reference for converting TCGA VCF files to MAF
5 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
646
views
Comment:
Comment: Why are there several gene expression files (for example, miRNA) in TCGA for one
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
565
views
Comment:
Comment: Two days_to_last_followups encountered when conducting Survival Analysis with TC
5 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
915
views
Comment:
Comment: Help locating TCGA data from cbioportal
5 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
1
reply
646
views
Answer:
Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
5 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
878
views
Comment:
Comment: different sample size between TCGA portal and TCGAbiolinks package
6 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
1.1k
views
Comment:
Comment: CPTAC data download, transcriptomics
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
622
views
Answer:
Answer: cptac data download
6 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
0
replies
1.6k
views
Comment:
Comment: Can BWA (mem) detect longer deletions?
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.1k
views
Comment:
Comment: How does one access TCGA controlled data in AWS S3?
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.1k
views
Comment:
Comment: How does one access TCGA controlled data in AWS S3?
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
878
views
Answer:
Answer: different sample size between TCGA portal and TCGAbiolinks package
6 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
1.1k
views
Comment:
Comment: How does one access TCGA controlled data in AWS S3?
6 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
1
reply
6.0k
views
Answer:
Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by
Zhenyu Zhang
★ 1.2k
246 results • Page
1 of 5
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6