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Comment: Comment: How to deal with duplicated gene IDs in TCGA RNA expression data?
7 days ago by Zhenyu Zhang ▴ 800
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298
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Answer: Answer: How to download data for a specific time period in GDC portal?
20 days ago by Zhenyu Zhang ▴ 800
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439
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Answer: Answer: Fast BAM header editing
20 days ago by Zhenyu Zhang ▴ 800
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325
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Answer: Answer: GDC API: Obtain the Objective Power (or Magnification) of a WSI file
27 days ago by Zhenyu Zhang ▴ 800
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543
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Comment: Comment: Matching gene-expression data with clinical data: best practices.
9 weeks ago by Zhenyu Zhang ▴ 800
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294
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Comment: Comment: Therapy response for multiple cancer types
9 weeks ago by Zhenyu Zhang ▴ 800
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1.0k
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Comment: Comment: problem for comparing 2 type of annotation file
10 weeks ago by Zhenyu Zhang ▴ 800
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403
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News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 3 months ago by 39k • written 3 months ago by ▴ 800
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316
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Answer: Answer: Recent GDC Data Updating Parameters
3 months ago by Zhenyu Zhang ▴ 800
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690
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Comment: Comment: Mapping files to patients in TCGA (RNA-seq)
5 months ago by Zhenyu Zhang ▴ 800
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452
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Answer: Answer: UUIDtoBarcode Renaming of Folders
5 months ago by Zhenyu Zhang ▴ 800
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4.5k
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Answer: Answer: How to get SNP genotypes in somatic mutation files with MAF(Mutation Annotation
5 months ago by Zhenyu Zhang ▴ 800
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571
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Answer: Answer: TCGA RNA Quantification
5 months ago by Zhenyu Zhang ▴ 800
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1.1k
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Comment: Comment: how about the proteome profiling ?
5 months ago by Zhenyu Zhang ▴ 800
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637
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Answer: Answer: Good practices for RNA-seq (2x50, 2x75, 2x100) aligment with STAR + RSEM
5 months ago by Zhenyu Zhang ▴ 800
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428
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Answer: Answer: Search filename in the GDC data portal
5 months ago by Zhenyu Zhang ▴ 800
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428
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Answer: Answer: Search filename in the GDC data portal
5 months ago by Zhenyu Zhang ▴ 800
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1.1k
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Comment: Comment: how about the proteome profiling ?
7 months ago by Zhenyu Zhang ▴ 800
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1.1k
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Answer: Answer: how about the proteome profiling ?
7 months ago by Zhenyu Zhang ▴ 800
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877
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Comment: Comment: Understanding log2 transformation for TPM
7 months ago by Zhenyu Zhang ▴ 800
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412
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Answer: Answer: TOPMED imputation output SNP with two-base alleles
8 months ago by Zhenyu Zhang ▴ 800
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1
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877
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Answer: Answer: Understanding log2 transformation for TPM
8 months ago by Zhenyu Zhang ▴ 800
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1.1k
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
8 months ago by Zhenyu Zhang ▴ 800
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1.5k
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Comment: Comment: TCGA library type information
8 months ago by Zhenyu Zhang ▴ 800
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1.4k
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Comment: Comment: TCGA STAR - Counts, where are estimated counts?
8 months ago by Zhenyu Zhang ▴ 800
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372
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Answer: Answer: Methylation datasets TCGA
8 months ago by Zhenyu Zhang ▴ 800
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974
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Answer: Answer: How to pair TCGA bam files with no properly paired reads?
8 months ago by Zhenyu Zhang ▴ 800
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1.4k
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Answer: Answer: TCGA STAR - Counts, where are estimated counts?
9 months ago by Zhenyu Zhang ▴ 800
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407
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Answer: Answer: How to check fastq file for feature retained from vector construct after RNA-seq
10 months ago by Zhenyu Zhang ▴ 800
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0
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750
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Answer: Answer: TCGA RNA-Seq data and CLINICAL Data
10 months ago by Zhenyu Zhang ▴ 800
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424
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Answer: Answer: Different types of imagery data available in TCGA
10 months ago by Zhenyu Zhang ▴ 800
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1
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1.1k
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
10 months ago by Zhenyu Zhang ▴ 800
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425
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Answer: Answer: CPTAC data, download, merge
10 months ago by Zhenyu Zhang ▴ 800
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3.2k
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Comment: Comment: VEP for cancer annotation using COSMIC
10 months ago by Zhenyu Zhang ▴ 800
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429
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Answer: Answer: Harmonized RNA-Seq Analysis of Different GDC Queried Projects
11 months ago by Zhenyu Zhang ▴ 800
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844
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Comment: Comment: RNA Seq HTSeq download GDC portal
11 months ago by Zhenyu Zhang ▴ 800
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4.7k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
12 months ago by Zhenyu Zhang ▴ 800
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1
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4.7k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
13 months ago by Zhenyu Zhang ▴ 800
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1.0k
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Comment: Comment: WES data analysis: the rationale behind merging BAM files and marking duplicates
13 months ago by Zhenyu Zhang ▴ 800
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1.0k
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Comment: Comment: WES data analysis: the rationale behind merging BAM files and marking duplicates
13 months ago by Zhenyu Zhang ▴ 800
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1
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618
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Comment: Comment: When to merge BAM or SAM files?
14 months ago by Zhenyu Zhang ▴ 800
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8
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3.0k
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Are there any GenomeStudio alternatives to process Illumina genotyping array?
genomestudio genotyping array illumina
14 months ago by Zhenyu Zhang ▴ 800
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0
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3.0k
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Answer: Answer: Are there any GenomeStudio alternatives to process Illumina genotyping array?
14 months ago by Zhenyu Zhang ▴ 800
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562
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Comment: Comment: Efficient Operations on GDC/TCGA data
14 months ago by Zhenyu Zhang ▴ 800
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1.4k
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Answer: Answer: M.S. Bioinformatics and Computational Biology: Will I be able to find a job afte
15 months ago by Zhenyu Zhang ▴ 800
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0
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920
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Answer: Answer: lncRNA quantification featurecounts
15 months ago by Zhenyu Zhang ▴ 800
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565
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Answer: Answer: Type of Normalization done to TCGA level 3 Methylation Data
15 months ago by Zhenyu Zhang ▴ 800
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580
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Answer: Answer: TCGA survival by gene expression. Gene is missing everywhere I look, but should
15 months ago by Zhenyu Zhang ▴ 800
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452
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Answer: Answer: Is it representative to use the minimal matched data of RNA-Seq in TCGA?
15 months ago by Zhenyu Zhang ▴ 800
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1.2k
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Answer: Answer: Why does TCGA RNA-seq pipeline starts from a BAM file?
15 months ago by Zhenyu Zhang ▴ 800
149 results • Page 1 of 3
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