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Answer: Answer: Annotation of gene expression TCGA data
2.3 years ago by Zhenyu Zhang ★ 1.3k
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1.4k
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Comment: Comment: Where to get the molecular subtype information of STAD sample in TCGA
2.3 years ago by Zhenyu Zhang ★ 1.3k
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2.3k
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Answer: Answer: A question about the raw RNA-seq processing workflow
2.3 years ago by Zhenyu Zhang ★ 1.3k
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1
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2.1k
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Comment: Comment: How to deal with duplicated gene IDs in TCGA RNA expression data?
2.3 years ago by Zhenyu Zhang ★ 1.3k
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831
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Answer: Answer: How to download data for a specific time period in GDC portal?
2.3 years ago by Zhenyu Zhang ★ 1.3k
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1.6k
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Answer: Answer: Fast BAM header editing
2.3 years ago by Zhenyu Zhang ★ 1.3k
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0
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924
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Answer: Answer: GDC API: Obtain the Objective Power (or Magnification) of a WSI file
2.4 years ago by Zhenyu Zhang ★ 1.3k
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2.4k
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Comment: Comment: Matching gene-expression data with clinical data: best practices.
2.5 years ago by Zhenyu Zhang ★ 1.3k
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1.1k
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Comment: Comment: Therapy response for multiple cancer types
2.5 years ago by Zhenyu Zhang ★ 1.3k
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1.9k
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Comment: Comment: problem for comparing 2 type of annotation file
2.5 years ago by Zhenyu Zhang ★ 1.3k
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0
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824
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Answer: Answer: Recent GDC Data Updating Parameters
2.6 years ago by Zhenyu Zhang ★ 1.3k
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1
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1.5k
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Comment: Comment: Mapping files to patients in TCGA (RNA-seq)
2.7 years ago by Zhenyu Zhang ★ 1.3k
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0
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957
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Answer: Answer: UUIDtoBarcode Renaming of Folders
2.8 years ago by Zhenyu Zhang ★ 1.3k
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0
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5.6k
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Answer: Answer: How to get SNP genotypes in somatic mutation files with MAF(Mutation Annotation
2.8 years ago by Zhenyu Zhang ★ 1.3k
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0
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2.4k
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Answer: Answer: TCGA RNA Quantification
2.8 years ago by Zhenyu Zhang ★ 1.3k
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1
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2.6k
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Comment: Comment: how about the proteome profiling ?
2.8 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.5k
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Answer: Answer: Good practices for RNA-seq (2x50, 2x75, 2x100) aligment with STAR + RSEM
2.8 years ago by Zhenyu Zhang ★ 1.3k
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0
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993
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Answer: Answer: Search filename in the GDC data portal
2.8 years ago by Zhenyu Zhang ★ 1.3k
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0
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993
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Answer: Answer: Search filename in the GDC data portal
2.8 years ago by Zhenyu Zhang ★ 1.3k
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1
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2.6k
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Comment: Comment: how about the proteome profiling ?
2.9 years ago by Zhenyu Zhang ★ 1.3k
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1
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2.6k
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Answer: Answer: how about the proteome profiling ?
2.9 years ago by Zhenyu Zhang ★ 1.3k
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0
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3.7k
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Comment: Comment: Understanding log2 transformation for TPM
2.9 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.1k
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Answer: Answer: TOPMED imputation output SNP with two-base alleles
2.9 years ago by Zhenyu Zhang ★ 1.3k
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1
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3.7k
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Answer: Answer: Understanding log2 transformation for TPM
2.9 years ago by Zhenyu Zhang ★ 1.3k
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0
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3.5k
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
2.9 years ago by Zhenyu Zhang ★ 1.3k
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3.5k
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Comment: Comment: TCGA library type information
2.9 years ago by Zhenyu Zhang ★ 1.3k
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5.3k
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Comment: Comment: TCGA STAR - Counts, where are estimated counts?
2.9 years ago by Zhenyu Zhang ★ 1.3k
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840
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Answer: Answer: Methylation datasets TCGA
2.9 years ago by Zhenyu Zhang ★ 1.3k
5
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2.6k
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Answer: Answer: How to pair TCGA bam files with no properly paired reads?
2.9 years ago by Zhenyu Zhang ★ 1.3k
2
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1
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5.3k
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Answer: Answer: TCGA STAR - Counts, where are estimated counts?
3.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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833
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Answer: Answer: How to check fastq file for feature retained from vector construct after RNA-seq
3.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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2.7k
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Answer: Answer: TCGA RNA-Seq data and CLINICAL Data
3.1 years ago by Zhenyu Zhang ★ 1.3k
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1
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1.2k
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Answer: Answer: Different types of imagery data available in TCGA
3.1 years ago by Zhenyu Zhang ★ 1.3k
2
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1
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3.5k
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
3.1 years ago by Zhenyu Zhang ★ 1.3k
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1.3k
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Answer: Answer: CPTAC data, download, merge
3.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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7.0k
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Comment: Comment: VEP for cancer annotation using COSMIC
3.1 years ago by Zhenyu Zhang ★ 1.3k
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0
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884
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Answer: Answer: Harmonized RNA-Seq Analysis of Different GDC Queried Projects
3.3 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.8k
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Comment: Comment: RNA Seq HTSeq download GDC portal
3.3 years ago by Zhenyu Zhang ★ 1.3k
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0
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9.5k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
3.3 years ago by Zhenyu Zhang ★ 1.3k
0
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1
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9.5k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
3.4 years ago by Zhenyu Zhang ★ 1.3k
1
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0
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2.5k
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Comment: Comment: WES data analysis: the rationale behind merging BAM files and marking duplicates
3.4 years ago by Zhenyu Zhang ★ 1.3k
0
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1
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2.5k
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Comment: Comment: WES data analysis: the rationale behind merging BAM files and marking duplicates
3.4 years ago by Zhenyu Zhang ★ 1.3k
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1
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2.1k
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Comment: Comment: When to merge BAM or SAM files?
3.5 years ago by Zhenyu Zhang ★ 1.3k
2
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8
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4.8k
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Are there any GenomeStudio alternatives to process Illumina genotyping array?
genomestudio genotyping array illumina
3.5 years ago by Zhenyu Zhang ★ 1.3k
0
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0
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4.8k
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Answer: Answer: Are there any GenomeStudio alternatives to process Illumina genotyping array?
3.5 years ago by Zhenyu Zhang ★ 1.3k
1
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0
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1.2k
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Comment: Comment: Efficient Operations on GDC/TCGA data
3.5 years ago by Zhenyu Zhang ★ 1.3k
4
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0
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6.9k
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Answer: Answer: M.S. Bioinformatics and Computational Biology: Will I be able to find a job afte
3.5 years ago by Zhenyu Zhang ★ 1.3k
1
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0
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1.8k
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Answer: Answer: lncRNA quantification featurecounts
3.5 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.0k
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Answer: Answer: Type of Normalization done to TCGA level 3 Methylation Data
3.5 years ago by Zhenyu Zhang ★ 1.3k
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0
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1.1k
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Answer: Answer: TCGA survival by gene expression. Gene is missing everywhere I look, but should
3.5 years ago by Zhenyu Zhang ★ 1.3k
301 results • Page 4 of 7
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