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Answer:
Answer: Nomalization - TCGA, RNA-seq and Microarray
7 days ago by
Zhenyu Zhang
★ 1.2k
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0
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209
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Answer:
Answer: Human Methylation Infinum Bead - probe to gene mapping
5 weeks ago by
Zhenyu Zhang
★ 1.2k
1
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0
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584
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Answer: Artificial deletion in bam
6 weeks ago by
Zhenyu Zhang
★ 1.2k
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0
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386
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Answer:
Answer: Help with finding Genomic coordinates and exon they belong to
6 weeks ago by
Zhenyu Zhang
★ 1.2k
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0
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261
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Answer:
Answer: Quantify the junction abundance?
6 weeks ago by
Zhenyu Zhang
★ 1.2k
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1
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416
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Answer:
Answer: lncRNA from TCGA
6 weeks ago by
Zhenyu Zhang
★ 1.2k
2
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0
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347
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Answer:
Answer: Can I have multiple active GDC download tokens?
7 weeks ago by
Zhenyu Zhang
★ 1.2k
0
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1
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292
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Answer:
Answer: Biobambam vs Picard in RNA Sequencing Analysis for BAM to FASTQ
8 weeks ago by
Zhenyu Zhang
★ 1.2k
1
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0
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319
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Answer:
Answer: TCGA clinical data: Multiple measure of response columns in merged clinical xml
9 weeks ago by
Zhenyu Zhang
★ 1.2k
0
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2
replies
1.5k
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Answer:
Answer: Novel sparse optimisation for high accuracy cancer classification on the 33-canc
11 weeks ago by
Zhenyu Zhang
★ 1.2k
1
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1
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334
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Answer:
Answer: TCGA metadata intersection
11 weeks ago by
Zhenyu Zhang
★ 1.2k
0
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0
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336
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Answer:
Answer: How to find clinical data for TARGET AML
12 weeks ago by
Zhenyu Zhang
★ 1.2k
0
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1
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568
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Answer:
Answer: How to find out sample type information of '.rna_seq.augmented_star_gene_counts.
3 months ago by
Zhenyu Zhang
★ 1.2k
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1
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965
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Answer:
Answer: Is it possible to access the code of a bioinformatics article?
3 months ago by
Zhenyu Zhang
★ 1.2k
0
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1
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508
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Answer:
Answer: Help doing differential expression analysis -experimental design and gProfiler T
5 months ago by
Zhenyu Zhang
★ 1.2k
0
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0
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455
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Answer:
Answer: Diferences between TCGAbiolinks and cBioportal
5 months ago by
Zhenyu Zhang
★ 1.2k
2
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1
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670
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Answer:
Answer: Why are there several gene expression files (for example, miRNA) in TCGA for one
6 months ago by
Zhenyu Zhang
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0
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0
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633
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Answer:
Answer: cptac data download
7 months ago by
Zhenyu Zhang
★ 1.2k
0
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1
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893
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Answer:
Answer: different sample size between TCGA portal and TCGAbiolinks package
7 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
1
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6.1k
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Answer:
Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by
Zhenyu Zhang
★ 1.2k
0
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0
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553
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Answer:
Answer: Problems encountered during the survival analysis with TCGA data
7 months ago by
Zhenyu Zhang
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1
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0
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753
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Answer:
Answer: How to DESeq2 using miRNA data obtained using TCGAbiolinks
8 months ago by
Zhenyu Zhang
★ 1.2k
1
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1
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2.2k
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Answer:
Answer: What is the amount of sequencing data produced annually?
8 months ago by
Zhenyu Zhang
★ 1.2k
0
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0
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559
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Answer:
Answer: What gene annotation was used for PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA
8 months ago by
Zhenyu Zhang
★ 1.2k
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0
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944
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Answer:
Answer: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
9 months ago by
Zhenyu Zhang
★ 1.2k
1
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0
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735
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Answer:
Answer: Batch correction of TCGA data from TCGAbiolinks and cBioPortal
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
972
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Answer:
Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
9 months ago by
Zhenyu Zhang
★ 1.2k
0
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1
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1.0k
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Answer:
Answer: Number of genes covered in WES
9 months ago by
Zhenyu Zhang
★ 1.2k
1
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1
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1.4k
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Answer:
Answer: DNBseq vs Illumina
9 months ago by
Zhenyu Zhang
★ 1.2k
2
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0
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594
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Answer:
Answer: Maf File Bar Code
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
771
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Answer:
Answer: Ensembl Ref/alt allele discrepancy
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.3k
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Answer:
Answer: Convert files made for b37 into hg19 human reference?
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.0k
views
Answer:
Answer: Methylation Analysis - Missing Chromosome and Position Information for some CpG
9 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
1
reply
497
views
Answer:
Answer: Is it ok to do Indel realignment after removing subsets of reads?
10 months ago by
Zhenyu Zhang
★ 1.2k
0
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1
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3.6k
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Answer:
Answer: RNA-Seq analysis with Python
10 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
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1.1k
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Answer:
Answer: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
10 months ago by
Zhenyu Zhang
★ 1.2k
1
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1
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1.3k
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Answer:
Answer: laptop or PC for the bioinformatics jobs -- specification
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
698
views
Answer:
Answer: Log-transformation of small values with good fold change and P values
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
855
views
Answer:
Answer: cBioPortal data with negative log2(FPKM + 1) values
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
484
views
Answer:
Answer: Multiple Tumor Count Files from a single Patient. How to merge or select?
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
841
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Answer:
Answer: TCGA methylation data analysis
11 months ago by
Zhenyu Zhang
★ 1.2k
0
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0
replies
460
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Answer:
Answer: Why sone miRNAs are not present in TCGA data
11 months ago by
Zhenyu Zhang
★ 1.2k
0
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1
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1.6k
views
Answer:
Answer: Where can I find a good RNA-seq dataset on cancer?
11 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
377
views
Answer:
Answer: transcript abundance, control and wgs
11 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
488
views
Answer:
Answer: Annotation of gene expression TCGA data
11 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.3k
views
Answer:
Answer: A question about the raw RNA-seq processing workflow
11 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
524
views
Answer:
Answer: How to download data for a specific time period in GDC portal?
12 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
900
views
Answer:
Answer: Fast BAM header editing
12 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
587
views
Answer:
Answer: GDC API: Obtain the Objective Power (or Magnification) of a WSI file
12 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
517
views
Answer:
Answer: Recent GDC Data Updating Parameters
15 months ago by
Zhenyu Zhang
★ 1.2k
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