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Comment:
Comment: How does one access TCGA controlled data in AWS S3?
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.1k
views
Comment:
Comment: How does one access TCGA controlled data in AWS S3?
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
893
views
Answer:
Answer: different sample size between TCGA portal and TCGAbiolinks package
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
1.1k
views
Comment:
Comment: How does one access TCGA controlled data in AWS S3?
7 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
1
reply
6.1k
views
Answer:
Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
553
views
Answer:
Answer: Problems encountered during the survival analysis with TCGA data
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
665
views
Comment:
Comment: TPM RNA-seq data for differential expression analysis
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
466
views
Comment:
Comment: Comparing multiple RNASeq studies
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.2k
views
Comment:
Comment: Calculation of TMB on gene level
7 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
528
views
Comment:
Comment: Understanding TCGA barcodes with dot in the fieldname
7 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
753
views
Answer:
Answer: How to DESeq2 using miRNA data obtained using TCGAbiolinks
8 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
795
views
Comment:
Comment: CNV calling
8 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
2.2k
views
Answer:
Answer: What is the amount of sequencing data produced annually?
8 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
760
views
Comment:
Comment: Is a PON necessary for tumor-normal matched Mutect2?
8 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
561
views
Comment:
Comment: TCGA gene expression quantitation batch information
8 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
559
views
Answer:
Answer: What gene annotation was used for PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA
8 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
760
views
Comment:
Comment: Is a PON necessary for tumor-normal matched Mutect2?
8 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
944
views
Answer:
Answer: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
541
views
Comment:
Comment: Differential gene expression with specif genes of interest
9 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
1.1k
views
Comment:
Comment: What database would have a list of gene names and aliases for yeast?
9 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
735
views
Answer:
Answer: Batch correction of TCGA data from TCGAbiolinks and cBioPortal
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.6k
views
Comment:
Comment: Merge BAM files from (totally) different references
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
972
views
Answer:
Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.0k
views
Answer:
Answer: Number of genes covered in WES
9 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
1.4k
views
Answer:
Answer: DNBseq vs Illumina
9 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
0
replies
594
views
Answer:
Answer: Maf File Bar Code
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
771
views
Answer:
Answer: Ensembl Ref/alt allele discrepancy
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
682
views
Comment:
Comment: Is it possible to interpret HGVS without transcript version number?
9 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
944
views
Comment:
Comment: Grouping TCGA samples by tumor_tissue_site: Can some groups be merged to decreas
9 months ago by
Zhenyu Zhang
★ 1.2k
3
votes
1
reply
554
views
Comment:
Comment: Send BAM files from server to cluster
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.3k
views
Answer:
Answer: Convert files made for b37 into hg19 human reference?
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
781
views
Comment:
Comment: PON and germline files for Mutect2 Tumor-only mode
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.5k
views
Comment:
Comment: How can I generate a list of 100 genomic intervals from bam files?
9 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.0k
views
Answer:
Answer: Methylation Analysis - Missing Chromosome and Position Information for some CpG
9 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
497
views
Comment:
Comment: Is it ok to do Indel realignment after removing subsets of reads?
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
1.1k
views
Comment:
Comment: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
10 months ago by
Zhenyu Zhang
★ 1.2k
2
votes
1
reply
497
views
Answer:
Answer: Is it ok to do Indel realignment after removing subsets of reads?
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
855
views
Comment:
Comment: cBioPortal data with negative log2(FPKM + 1) values
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
3.6k
views
Answer:
Answer: RNA-Seq analysis with Python
10 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
1.1k
views
Answer:
Answer: Can I liftover hs37d5 to hg38 using hg19ToHg38 chain file?
10 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
1
reply
1.3k
views
Answer:
Answer: laptop or PC for the bioinformatics jobs -- specification
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
698
views
Answer:
Answer: Log-transformation of small values with good fold change and P values
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
855
views
Answer:
Answer: cBioPortal data with negative log2(FPKM + 1) values
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
484
views
Answer:
Answer: Multiple Tumor Count Files from a single Patient. How to merge or select?
10 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
841
views
Answer:
Answer: TCGA methylation data analysis
11 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
1.6k
views
Comment:
Comment: Where can I find a good RNA-seq dataset on cancer?
11 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
1.6k
views
Comment:
Comment: Where can I find a good RNA-seq dataset on cancer?
11 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
0
replies
460
views
Answer:
Answer: Why sone miRNAs are not present in TCGA data
11 months ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
1.6k
views
Answer:
Answer: Where can I find a good RNA-seq dataset on cancer?
11 months ago by
Zhenyu Zhang
★ 1.2k
1
vote
0
replies
377
views
Answer:
Answer: transcript abundance, control and wgs
11 months ago by
Zhenyu Zhang
★ 1.2k
251 results • Page
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