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Comment: Comment: OMA use case
7 months ago by Adrian Altenhoff ★ 1.1k
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1.7k
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Comment: Comment: OMA use case
7 months ago by Adrian Altenhoff ★ 1.1k
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1.7k
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Comment: Comment: OMA use case
7 months ago by Adrian Altenhoff ★ 1.1k
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3
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1.7k
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Answer: Answer: OMA use case
7 months ago by Adrian Altenhoff ★ 1.1k
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1.4k
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Answer: Answer: Is it possible to get the percentage identity between a pair of orthologs at the
10 months ago by Adrian Altenhoff ★ 1.1k
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2.2k
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Comment: Comment: Best Approach to Identify Human-C. elegans Orthologs?
11 months ago by Adrian Altenhoff ★ 1.1k
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943
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Answer: Answer: Converting OMA IDs to Ensembl gene names
15 months ago by Adrian Altenhoff ★ 1.1k
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604
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Answer: Answer: Obtaining OMA and HOG IDs
16 months ago by Adrian Altenhoff ★ 1.1k
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0
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638
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Answer: Answer: Finding orthologs between genome error
18 months ago by Adrian Altenhoff ★ 1.1k
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0
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688
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Answer: Answer: Mapping of OMA IDs to UniProtKB AC
19 months ago by Adrian Altenhoff ★ 1.1k
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1.9k
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Comment: Comment: OMA in AWS cloud
2.0 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.9k
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Answer: Answer: OMA in AWS cloud
2.1 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.0k
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Answer: Answer: Downloading Microsyntenic Fasta Sequences with Varying Chromosome Formats
2.2 years ago by Adrian Altenhoff ★ 1.1k
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3
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1.9k
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Answer: Answer: syntax errors when running part3 all-against-all
2.6 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.3k
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Answer: Answer: Obtaining every"Protein ID" from a genome in OMA
2.7 years ago by Adrian Altenhoff ★ 1.1k
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0
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829
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Answer: Answer: Error, (in LoadSpliceMap) string to parse is too long
2.7 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.2k
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Answer: Answer: OMA standalone error during database conversion step: Matches between X/X have b
2.9 years ago by Adrian Altenhoff ★ 1.1k
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0
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881
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Answer: Answer: To generate genome-wise orthologs including paralogs from OMA
2.9 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.1k
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Answer: Answer: Orthologs distances in OMA
3.5 years ago by Adrian Altenhoff ★ 1.1k
2
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0
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868
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Answer: Answer: Multiple OMA groups per uniprotID in OMAdb
3.5 years ago by Adrian Altenhoff ★ 1.1k
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1
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2.1k
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Comment: Comment: HOG without numbering in the genome of the ancestor reconstructed using the pyHA
3.7 years ago by Adrian Altenhoff ★ 1.1k
1
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1
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2.1k
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Comment: Comment: HOG without numbering in the genome of the ancestor reconstructed using the pyHA
3.7 years ago by Adrian Altenhoff ★ 1.1k
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0
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906
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Answer: Answer: Error while running All-against-All alignments in OMA
3.7 years ago by Adrian Altenhoff ★ 1.1k
1
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1
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4.4k
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Comment: Comment: Making python script for downloading genomes for OMA Analysis
3.9 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.1k
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Answer: Answer: OMA speed
3.9 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.1k
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Answer: Answer: OMA standalone "FileStat" error
3.9 years ago by Adrian Altenhoff ★ 1.1k
1
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0
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1.3k
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Answer: Answer: OMA Internet connection error - SLURM
3.9 years ago by Adrian Altenhoff ★ 1.1k
1
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0
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1.1k
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Answer: A: oma-cleanup cannot be executed
4.6 years ago by Adrian Altenhoff ★ 1.1k
3
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1
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1.7k
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Answer: A: OMA standalone, parallelization
4.7 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.3k
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Comment: C: Problem running OMA standalone
4.7 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.9k
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Comment: C: OMA-standalone and sequence gaps
4.8 years ago by Adrian Altenhoff ★ 1.1k
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1
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1.9k
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Answer: A: OMA-standalone and sequence gaps
4.8 years ago by Adrian Altenhoff ★ 1.1k
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1
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1.6k
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Comment: C: OMA Standalone 2.4.2: cannot write to .oma directory
4.8 years ago by Adrian Altenhoff ★ 1.1k
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0
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2.6k
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Comment: C: OMA Phase 2 stuck in "reading all vs. all" stage for 24 hours
4.8 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.7k
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Comment: C: Downloading all-against-all precomputed for any number of species returns 504 Ga
4.9 years ago by Adrian Altenhoff ★ 1.1k
1
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1
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1.7k
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Comment: C: Downloading all-against-all precomputed for any number of species returns 504 Ga
4.9 years ago by Adrian Altenhoff ★ 1.1k
1
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1
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1.7k
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Comment: C: Downloading all-against-all precomputed for any number of species returns 504 Ga
4.9 years ago by Adrian Altenhoff ★ 1.1k
1
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1
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1.7k
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Comment: C: Downloading all-against-all precomputed for any number of species returns 504 Ga
4.9 years ago by Adrian Altenhoff ★ 1.1k
4
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2
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2.5k
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Answer: A: Error running OMA standalone at HOG computation step
4.9 years ago by Adrian Altenhoff ★ 1.1k
2
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1
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2.5k
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Comment: C: Error running OMA standalone at HOG computation step
4.9 years ago by Adrian Altenhoff ★ 1.1k
2
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1
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2.5k
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Answer: A: Error running OMA standalone at HOG computation step
updated 4.9 years ago by 154k • written 4.9 years ago by ★ 1.1k
1
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0
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2.1k
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Comment: C: Predicting Gene Ontology function in OMA for large datasets
4.9 years ago by Adrian Altenhoff ★ 1.1k
1
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1
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2.1k
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Comment: C: Predicting Gene Ontology function in OMA for large datasets
4.9 years ago by Adrian Altenhoff ★ 1.1k
1
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1
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2.1k
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Comment: C: Predicting Gene Ontology function in OMA for large datasets
5.0 years ago by Adrian Altenhoff ★ 1.1k
1
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1
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2.1k
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Answer: A: Predicting Gene Ontology function in OMA for large datasets
5.0 years ago by Adrian Altenhoff ★ 1.1k
3
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1
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1.3k
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Answer: A: OMA standalone estimating memory use for bacterial genomes
5.1 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.4k
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Answer: A: Alignment scores thresholds with DNA
5.2 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.4k
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Comment: C: oma -c error report
5.3 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.3k
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Answer: A: can standalone OMA be used on protein fasta (not genome)
5.4 years ago by Adrian Altenhoff ★ 1.1k
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0
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1.2k
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Answer: A: Clusters proteins at each taxonomic rank - OMA
5.5 years ago by Adrian Altenhoff ★ 1.1k
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