User: User000

gravatar for User000
User000240
Reputation:
240
Status:
Trusted
Location:
Last seen:
2 days, 8 hours ago
Joined:
3 years, 12 months ago
Email:
o********@gmail.com

about me

Posts by User000

<prev • 165 results • page 1 of 17 • next >
0
votes
0
answers
74
views
0
answers
Functional categorization of genes
... Hello, I have several annotated genes with their functions (i.e.50S ribosomal protein L11-1, Pup-protein ligase, F-box plant-like, etc), GO terms/PFAM/interpro IDs. I would like to categorize my genes further into 20-30 broad categories based on their function. i.e: Amino acid metabolism ...
gene function written 3 days ago by User000240
0
votes
0
answers
167
views
0
answers
Comment: C: How to extend the heatmap data points that extended past end of ideogram in circ
... Warning*** Data point of type [highlight] [0-197195432] extended past end of ideogram [mm1 0-195471971]. This data point will be [trimmed]. I do not want these to be trimmed, but to be extended...I dont really know if this is possible at al ...
written 3 months ago by User000240
0
votes
0
answers
167
views
0
answers
Comment: C: How to extend the heatmap data points that extended past end of ideogram in circ
... I have an karyotype file with for example, chr1 0-20. In my 1st heatmap my chr size is 0-40 and 2nd is from 0-20, I want to use connectors to connect the genes, but since my 1st genome has longer chr size, it gets trimmed and data on the second heatmap is missing.... ...
written 3 months ago by User000240
0
votes
0
answers
167
views
0
answers
How to extend the heatmap data points that extended past end of ideogram in circos plot?
... Hello, Does anybody know if there is a way to extend heatmap or histogram or tile data points that are a bit outside the ideogram? Trimming is not the best solution as there seems that some data is missing... ...
circos written 3 months ago by User000240
0
votes
0
answers
182
views
0
answers
Database of PLANT cloned genes/How to get sequences of gene symbols
... Hi, Does anybody know of any database where I can find cloned genes of plants? Otherwise, if I have gene symbols where to get the fasta sequences? Thanks! ...
gene sequence written 4 months ago by User000240
0
votes
2
answers
379
views
2
answers
Comment: C: Add a legend to circos plot
... thanks a lot, yes i have seen inkscape before, seems to be confusing. Would you mind to explain shortly how to use it? I might try GIMP as well if it works.. ...
written 6 months ago by User000240
4
votes
2
answers
379
views
2
answers
Add a legend to circos plot
... Hello, I would like to add A,B,C tracks labelling to a circos plot. Would you suggest how to do it? I already left a space between the chromosomes. ...
circos written 6 months ago by User000240 • updated 6 months ago by Ibrahim Tanyalcin880
0
votes
2
answers
451
views
2
answers
Comment: C: Download genes from KEGG pathway
... thanks a lot! i will have a look! ...
written 6 months ago by User000240
0
votes
2
answers
451
views
2
answers
Comment: C: Download genes from KEGG pathway
... thank you, I have KGML files, but I am interested in having the seq-s...how can I download them? (not 1 by 1..) ...
written 6 months ago by User000240
1
vote
2
answers
451
views
2
answers
Download genes from KEGG pathway
... Hello, I am would like to download all genes of i.e. arabidopsis thaliana from i.e. circadian rhythm pathway in fasta format. Is there a way to download them in a batch mode, instead of opening and saving every single gene in a fasta format? ...
R python written 6 months ago by User000240 • updated 6 months ago by theobroma221.1k

Latest awards to User000

Popular Question 7 weeks ago, created a question with more than 1,000 views. For Aligning BAC to an assembled sequence
Popular Question 3 months ago, created a question with more than 1,000 views. For Aligning BAC to an assembled sequence
Popular Question 3 months ago, created a question with more than 1,000 views. For BAM file interpretation and consensus creation
Popular Question 7 months ago, created a question with more than 1,000 views. For BAM file interpretation and consensus creation
Popular Question 10 months ago, created a question with more than 1,000 views. For Finding Overlapping, Non Overlapping Hits
Popular Question 10 months ago, created a question with more than 1,000 views. For Finding Overlapping, Non Overlapping Hits
Popular Question 10 months ago, created a question with more than 1,000 views. For Finding Overlapping, Non Overlapping Hits
Popular Question 11 months ago, created a question with more than 1,000 views. For Finding Overlapping, Non Overlapping Hits
Popular Question 20 months ago, created a question with more than 1,000 views. For Plant Annotation Workflow
Popular Question 22 months ago, created a question with more than 1,000 views. For Mapping Illumina reads against one single gene
Centurion 22 months ago, created 100 posts.
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Blast Result: Finding Non Overlapping Hits
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Plant Annotation Workflow
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Blast Result: Finding Non Overlapping Hits
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Plant Annotation Workflow
Voter 3.0 years ago, voted more than 100 times.
Rising Star 3.8 years ago, created 50 posts within first three months of joining.
Supporter 3.8 years ago, voted at least 25 times.
Teacher 3.8 years ago, created an answer with at least 3 up-votes. For A: How To Calculate Overlap Read Lengths

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 670 users visited in the last hour