Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: User000

gravatar for User000
User000 • 380
Reputation:
380
Status:
Trusted
Location:
Last seen:
2 days, 12 hours ago
Joined:
6 years, 6 months ago
Email:
o********@gmail.com

about me

Posts by User000

<prev • 284 results • page 1 of 29 • next >
0
votes
1
answer
150
views
1
answers
Comment: C: Replace heterozygous GT to missing in vcf file using bcftools
... Hi, I'm using this command line: `/DATA/Tools/bcftools-1.10.2/bcftools filter -S . -e 'GT=="het"' {input.f1} > {output.f2}` It seems to be working...it that OK? because I expect -e to exclude, no? Should I run something like `/DATA/Tools/bcftools-1.10.2/bcftools filter -i 'GT=="het"' {input.f1} & ...
written 29 days ago by User000 • 380
0
votes
1
answer
150
views
1
answers
Comment: C: Replace heterozygous GT to missing in vcf file using bcftools
... -i doesnt work, -e seems to be working, is it normal? ...
written 4 weeks ago by User000 • 380
1
vote
1
answer
150
views
1
answer
Replace heterozygous GT to missing in vcf file using bcftools
... Hello, I would like to replace all `het GT 0/1` or `1/0`to missing data `./.` ? Is there any way to do it with `bcftools`? If no how could I do it. ...
vcf bcftools written 4 weeks ago by User000 • 380
0
votes
1
answer
157
views
1
answers
Comment: C: It is possible to get gzipped fastq.gz files as output in SABRE?
... I did something and nevertheless the errors the program build sabre executable, and the files it creates are `gzip compressed data, from Unix`.But I am not sure the changes I made to the script are OK. Could you, please, check? Should I create a new question? Thank you ...
written 6 weeks ago by User000 • 380
0
votes
1
answer
157
views
1
answers
Comment: C: It is possible to get gzipped fastq.gz files as output in SABRE?
... Since nothing was happening I re-build by typing `make` and it gave the following error (I put only a piece because it is too long for a comment): gcc -Wall -pedantic -DVERSION=1.00 -O3 -c src/demulti_single.c src/demulti_single.c: In function ‘single_usage’: src/demulti_single.c:28 ...
written 6 weeks ago by User000 • 380
0
votes
1
answer
157
views
1
answers
Comment: C: It is possible to get gzipped fastq.gz files as output in SABRE?
... Thanks so much! For now it is not working: should I change only il file `demulti_single.c`? also, `infn` will become `ingzn`? ...
written 7 weeks ago by User000 • 380
0
votes
1
answer
157
views
1
answers
Comment: C: It is possible to get gzipped fastq.gz files as output in SABRE?
... OMG, update will be hard for me, I can try, but I am not a brilliant programmer :) thank you ...
written 7 weeks ago by User000 • 380
0
votes
1
answer
157
views
1
answers
Comment: C: It is possible to get gzipped fastq.gz files as output in SABRE?
... I see, so I will have to gzip them post-demultiplexing. But it actually supports the gzip input, right? As stated also in the documentation "Sabre also supports gzipped file inputs" . Thank you a lot ...
written 7 weeks ago by User000 • 380
4
votes
1
answer
157
views
1
answer
It is possible to get gzipped fastq.gz files as output in SABRE?
... Hello, A quick question. I am using [SABRE][1] to demultiplex my single end GBS `fastq.gz` files. As input I am using directly my gzipped `fastq.gz` files, but I am not getting the output as a gzipped `fastq.gz`. Sabre is instead outputting a normal `ASCII text`, so `fastq` file. Is there any way t ...
demultiplex sabre written 7 weeks ago by User000 • 380 • updated 7 weeks ago by Pierre Lindenbaum ♦ 129k
0
votes
1
answer
412
views
1
answers
Comment: C: Bedtools intersect with header file
... I actually solved the problem 4 months ago I guess, so I do not remember now what was the problem, but it was pretty easy at the end :) and I never said it does not work ...
written 7 weeks ago by User000 • 380

Latest awards to User000

Popular Question 29 days ago, created a question with more than 1,000 views. For Convert BLAST format to EMBL file format
Popular Question 6 weeks ago, created a question with more than 1,000 views. For Convert BLAST format to EMBL file format
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Convert BLAST format to EMBL file format
Popular Question 3 months ago, created a question with more than 1,000 views. For Convert BLAST format to EMBL file format
Popular Question 3 months ago, created a question with more than 1,000 views. For Convert BLAST format to EMBL file format
Great Question 3 months ago, created a question with more than 5,000 views. For PC3 & PC2 using plotPCA function in R
Popular Question 4 months ago, created a question with more than 1,000 views. For Convert BLAST format to EMBL file format
Scholar 5 months ago, created an answer that has been accepted. For A: Bcftools filtering only 10% missing and heterozygous calls
Scholar 5 months ago, created an answer that has been accepted. For A: Bedtools intersect/bcftools annotate dublicate the SNPs
Great Question 23 months ago, created a question with more than 5,000 views. For Mapping Illumina reads against one single gene
Popular Question 23 months ago, created a question with more than 1,000 views. For Convert BLAST format to EMBL file format
Popular Question 23 months ago, created a question with more than 1,000 views. For Aligning BAC to an assembled sequence
Popular Question 23 months ago, created a question with more than 1,000 views. For A tool to align two assembled sequences
Popular Question 23 months ago, created a question with more than 1,000 views. For BAM file interpretation and consensus creation
Popular Question 23 months ago, created a question with more than 1,000 views. For Running BLAST on huge files
Popular Question 23 months ago, created a question with more than 1,000 views. For Mapping RNA-seq against genome
Popular Question 23 months ago, created a question with more than 1,000 views. For Download genes from KEGG pathway
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Mapping RNA-seq against genome
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Aligning BAC to an assembled sequence
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Mapping RNA-seq against genome
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Aligning BAC to an assembled sequence
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Mapping RNA-seq against genome
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Mapping RNA-seq against genome
Popular Question 2.7 years ago, created a question with more than 1,000 views. For Aligning BAC to an assembled sequence
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Aligning BAC to an assembled sequence
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1382 users visited in the last hour