User: User000

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User000240
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Posts by User000

<prev • 164 results • page 1 of 17 • next >
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Comment: C: How to extend the heatmap data points that extended past end of ideogram in circ
... Warning*** Data point of type [highlight] [0-197195432] extended past end of ideogram [mm1 0-195471971]. This data point will be [trimmed]. I do not want these to be trimmed, but to be extended...I dont really know if this is possible at al ...
written 5 weeks ago by User000240
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Comment: C: How to extend the heatmap data points that extended past end of ideogram in circ
... I have an karyotype file with for example, chr1 0-20. In my 1st heatmap my chr size is 0-40 and 2nd is from 0-20, I want to use connectors to connect the genes, but since my 1st genome has longer chr size, it gets trimmed and data on the second heatmap is missing.... ...
written 5 weeks ago by User000240
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How to extend the heatmap data points that extended past end of ideogram in circos plot?
... Hello, Does anybody know if there is a way to extend heatmap or histogram or tile data points that are a bit outside the ideogram? Trimming is not the best solution as there seems that some data is missing... ...
circos written 5 weeks ago by User000240
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Database of PLANT cloned genes/How to get sequences of gene symbols
... Hi, Does anybody know of any database where I can find cloned genes of plants? Otherwise, if I have gene symbols where to get the fasta sequences? Thanks! ...
gene sequence written 9 weeks ago by User000240
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Comment: C: Add a legend to circos plot
... thanks a lot, yes i have seen inkscape before, seems to be confusing. Would you mind to explain shortly how to use it? I might try GIMP as well if it works.. ...
written 4 months ago by User000240
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Add a legend to circos plot
... Hello, I would like to add A,B,C tracks labelling to a circos plot. Would you suggest how to do it? I already left a space between the chromosomes. ...
circos written 4 months ago by User000240 • updated 4 months ago by Ibrahim Tanyalcin820
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Comment: C: Download genes from KEGG pathway
... thanks a lot! i will have a look! ...
written 4 months ago by User000240
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Comment: C: Download genes from KEGG pathway
... thank you, I have KGML files, but I am interested in having the seq-s...how can I download them? (not 1 by 1..) ...
written 4 months ago by User000240
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Download genes from KEGG pathway
... Hello, I am would like to download all genes of i.e. arabidopsis thaliana from i.e. circadian rhythm pathway in fasta format. Is there a way to download them in a batch mode, instead of opening and saving every single gene in a fasta format? ...
R python written 4 months ago by User000240 • updated 4 months ago by theobroma221.0k
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Dotplot of multiple sequences in R
... Hi, I was using MUMmer to make a dot plot of several genes. However, I was wondering if there is a way to make a dot plot of multiple genes in R? i.e, I want to make dot plot of multiple genes for each chromosome in one graph. EDIT: Apart from fasta seq-s I also have the gene start-end information ...
R written 5 months ago by User000240

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