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10
votes
9
replies
5.6k
views
bcftools query add header
bcftools
updated 4 months ago by 153k • written 3.5 years ago by ▴ 750
9
votes
5
replies
27k
views
PC3 & PC2 using plotPCA function in R
R plotPCA PCA
updated 10 months ago by 45k • written 8.5 years ago by ▴ 750
0
votes
0
replies
1.0k
views
Comment: Comment: bcftools select sites with multiple combinations of FILTER column
18 months ago by User000 ▴ 750
0
votes
1
reply
1.0k
views
Comment: Comment: bcftools select sites with multiple combinatio ns of FILTER column
18 months ago by User000 ▴ 750
1
vote
4
replies
1.0k
views
bcftools select sites with multiple combinations of FILTER column
bcftools
18 months ago by User000 ▴ 750
0
votes
0
replies
1.6k
views
Comment: Comment: VEP/ CADD error - ERROR: Assembly is GRCh38 but CADD file does not contain GRCh3
2.4 years ago by User000 ▴ 750
0
votes
0
replies
823
views
Analyse UMI using picard's ExtractIlluminaBarcodes & IlluminaBasecallsToSam with 2 or 4 lanes
picard umi
2.4 years ago by User000 ▴ 750
0
votes
1
reply
1.2k
views
How to remove from BAM file header all chromosomes, except chrM
samtools
updated 2.2 years ago by 45k • written 2.6 years ago by ▴ 750
1
vote
1
reply
935
views
DepthOfCoverage badly formed genome location error
coverage
updated 2.5 years ago by ★ 3.0k • written 2.6 years ago by ▴ 750
1
vote
6
replies
4.0k
views
Bedtools coverage histogram
bedtools
updated 2.8 years ago by • 0 • written 4.3 years ago by ▴ 750
1
vote
0
replies
4.0k
views
Comment: Comment: Bedtools coverage histogram
2.9 years ago by User000 ▴ 750
0
votes
0
replies
860
views
Getting the mean normalized expression values of mutants and controls in DESeq2 prior calculation of Log2FC
DESeq2 RNAseq Log2FC
3.0 years ago by User000 ▴ 750
0
votes
0
replies
64k
views
Comment: Comment: How to extract specific chromosome from vcf file
3.3 years ago by User000 ▴ 750
0
votes
1
reply
7.4k
views
Comment: Comment: A script for extracting information related to a list of gene names from a file
3.3 years ago by User000 ▴ 750
0
votes
1
reply
7.4k
views
Comment: Comment: A script for extracting information related to a list of gene names from a file
3.3 years ago by User000 ▴ 750
0
votes
0
replies
1.6k
views
Comment: Comment: g.vcf file with different FORMAT (GT:AD:DP:GQ:PL:SB vs GT:DP:GQ:MIN_DP:PL)
3.4 years ago by User000 ▴ 750
0
votes
2
replies
1.6k
views
g.vcf file with different FORMAT (GT:AD:DP:GQ:PL:SB vs GT:DP:GQ:MIN_DP:PL)
vcf
3.4 years ago by User000 ▴ 750
1
vote
0
replies
719
views
How to get sample names and genotype for SNP in multi-sample VCF file with special occurence
vcf
3.5 years ago by User000 ▴ 750
2
votes
1
reply
5.6k
views
Answer: Answer: bcftools query add header
3.5 years ago by User000 ▴ 750
0
votes
0
replies
5.6k
views
Comment: Comment: bcftools query add header
3.5 years ago by User000 ▴ 750
0
votes
1
reply
5.6k
views
Comment: Comment: bcftools query add header
3.5 years ago by User000 ▴ 750
0
votes
1
reply
5.6k
views
Comment: Comment: bcftools query add header
3.5 years ago by User000 ▴ 750
0
votes
0
replies
1.6k
views
Comment: Comment: Merge two files with multiple columns by 4 common columns
3.5 years ago by User000 ▴ 750
3
votes
8
replies
1.6k
views
Merge two files with multiple columns by 4 common columns
vcf
updated 3.5 years ago by 21k • written 3.5 years ago by ▴ 750
0
votes
3
replies
1.6k
views
Comment: Comment: Merge two files with multiple columns by 4 common columns
3.5 years ago by User000 ▴ 750
0
votes
0
replies
19k
views
Comment: Comment: How to get sample names and genotype for SNP in multi-sample VCF file
3.5 years ago by User000 ▴ 750
1
vote
1
reply
2.4k
views
Comment: Comment: Failed to instantiate plugin dbNSFP in VEP
3.5 years ago by User000 ▴ 750
0
votes
1
reply
2.6k
views
Comment: Comment: Exract only first individual from vcf file
3.6 years ago by User000 ▴ 750
0
votes
1
reply
2.6k
views
Comment: Comment: Exract only first individual from vcf file
3.6 years ago by User000 ▴ 750
5
votes
9
replies
2.6k
views
Extract only first individual from vcf files
vcf
updated 3.6 years ago by 21k • written 3.6 years ago by ▴ 750
5
votes
5
replies
2.0k
views
Enrichment plot in R with custom pathways
RNAseq DESeq2 enrichplot R
updated 3.6 years ago by 27k • written 3.6 years ago by ▴ 750
0
votes
1
reply
2.0k
views
Comment: Comment: Enrichment plot in R with custom pathways
3.6 years ago by User000 ▴ 750
0
votes
1
reply
3.0k
views
Comment: Comment: Snakemake error with 'wildcard'
3.6 years ago by User000 ▴ 750
0
votes
1
reply
3.0k
views
Answer: Answer: Snakemake error with 'wildcard'
3.6 years ago by User000 ▴ 750
0
votes
1
reply
3.0k
views
Comment: Comment: Snakemake error with 'wildcard'
3.6 years ago by User000 ▴ 750
10
votes
7
replies
8.5k
views
Split multiallelic SNPs to biallelic from vcf
python R bash vcf
updated 3.6 years ago by ★ 4.4k • written 4.5 years ago by ▴ 750
0
votes
1
reply
2.5k
views
Comment: Comment: DESeq2 contrast multiple treated conditions versus multiple control conditions
3.6 years ago by User000 ▴ 750
0
votes
0
replies
2.5k
views
Comment: Comment: DESeq2 contrast multiple treated conditions versus multiple control conditions
3.6 years ago by User000 ▴ 750
2
votes
4
replies
2.5k
views
DESeq2 contrast multiple treated conditions versus multiple control conditions
RNAseq DESeq2
3.6 years ago by User000 ▴ 750
0
votes
0
replies
3.2k
views
Comment: Comment: How to pass multiple "argument value" pair using variable in GATK command?
3.7 years ago by User000 ▴ 750
1
vote
0
replies
1.0k
views
Enrichplot heatplot label_format does not work
enrichplot DESeq2 heatplot RNAseq
4.0 years ago by User000 ▴ 750
0
votes
0
replies
5.0k
views
Comment: Comment: DESeq2 log2FC and p-value filtering
4.0 years ago by User000 ▴ 750
0
votes
0
replies
5.0k
views
Comment: Comment: DESeq2 log2FC and p-value filtering
4.0 years ago by User000 ▴ 750
0
votes
1
reply
5.0k
views
Comment: Comment: DESeq2 log2FC and p-value filtering
4.0 years ago by User000 ▴ 750
0
votes
1
reply
5.0k
views
Comment: Comment: DESeq2 log2FC and p-value filtering
4.0 years ago by User000 ▴ 750
7
votes
7
replies
5.0k
views
DESeq2 log2FC and p-value filtering
DESeq2 RNAseq
updated 4.0 years ago by 22k • written 4.0 years ago by ▴ 750
0
votes
0
replies
980
views
DESeq2 treated vs untreated and contrast vs no contrast
DESeq2 RNAseq
4.0 years ago by User000 ▴ 750
16
votes
15
replies
16k
views
8 follow
BAM files compression
bam
updated 4.1 years ago by ▴ 230 • written 5.6 years ago by ▴ 750
2
votes
2
replies
1.9k
views
DESeq2 results difference using contrast and single conditions
DESeq2 RNAseq
4.2 years ago by User000 ▴ 750
5
votes
4
replies
1.7k
views
Convert missing genotype ./. to homozygous 0/0 in vcf
vcf
updated 4.2 years ago by ▴ 480 • written 4.2 years ago by ▴ 750
393 results • Page 1 of 8
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