User: 2184687-1231-83-

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Posts by 2184687-1231-83-

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Equivalent To Price Per Base In Massspec Peptide Fragment Sequencing?
... Does anybody know of an equivalent to the price per base measure in DNA sequencing in the field of protein sequencing by MassSpec peptide fragment identification? If so, what is the price per aminoacid in the most modern highest throughput machine on the market today? ...
sequencing mass-spec written 6.7 years ago by 2184687-1231-83-4.9k • updated 6.7 years ago by Niek De Klein2.4k
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Comment: C: Eqtl Data In Dogs?
... Long haplotypes should make trait association pop out even more, given the same sample size. ...
written 6.7 years ago by 2184687-1231-83-4.9k
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Answer: A: Ion Torrent Transcriptome Data Sets?
... http://lifetech-it.hosted.jivesoftware.com/docs/DOC-2697 ...
written 6.7 years ago by 2184687-1231-83-4.9k
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Comment: C: Tools For De Novo Assembly Of Mirnas?
... ... for which there is no reference genome. ...
written 6.7 years ago by 2184687-1231-83-4.9k
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Answer: A: Reconstruct Alternative Haplotypes From Short Reads?
... Fermi claims to be able to reconstruct the different haplotype by preserving heterozygotes which are often collapsed by other assemblers: http://github.com/lh3/fermi/blob/master/README ...
written 6.8 years ago by 2184687-1231-83-4.9k
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Answer: A: Pairwise Genome Alignment Of Two ~30Mb Genomes To Give A Genetic Distance Estima
... BLAST LASTZ MUMmer CHAOS GRIMM-synteny DRIMM-synteny Mercator Enredo OSfinder SuperMap progressiveMauve MUGSY MAVID LAGAN/Multi-LAGAN DIALIGN SeqAn::T-Coffee FSA Pecan NUCmer/PROmer MULTIZ/TBA AXTCHAIN/CHAINNET ...
written 6.8 years ago by 2184687-1231-83-4.9k
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Computational Predictions Of S/Mar Sites?
... Are there any computational predictions of S/MAR sites available in a format that can be visualized in a browser like Ensembl or UCSC Genome Browser? ...
ucsc ensembl sequence browser written 6.8 years ago by 2184687-1231-83-4.9k • updated 6.8 years ago by Casey Bergman17k
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Answer: A: Very Few Reads Mapping Back To Contigs - Plant Transcriptome
... I would try Newbler 2.6 if you have access to it. Use bwasw to map 454 reads to contigs. ...
written 6.8 years ago by 2184687-1231-83-4.9k
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Comment: C: Shared Genomic Segments In Exome Data.
... Great Q. I am very much interested in reading the answers... ...
written 6.8 years ago by 2184687-1231-83-4.9k
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Answer: A: Diversity Study Using Illumina For Non Model Species Having Highly Repetitive An
... You can do whole genome sequencing with Illumina for a variety of diverse samples at relatively low-coverage. Then assemble all the sequencing data together in one go, combining all samples together in the input data for the assembler, in order to have long contigs with average high-coverage to defi ...
written 6.8 years ago by 2184687-1231-83-4.9k

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Student 6.8 years ago, asked a question with at least 3 up-votes. For Computational Predictions Of S/Mar Sites?
Popular Question 6.8 years ago, created a question with more than 1,000 views. For Convert Plink Ped Format Into Hapmap Format?
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Teacher 6.8 years ago, created an answer with at least 3 up-votes. For A: How Can I Find Target Genes Of A Transcription Factor?
Appreciated 6.8 years ago, created a post with more than 5 votes. For A: Finding The Orthologs In The Genome
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Teacher 6.9 years ago, created an answer with at least 3 up-votes. For A: What'S The Best Method For Assigning Go Slim Terms To Non-Model Plant Genes?
Student 6.9 years ago, asked a question with at least 3 up-votes. For Example Datasets For Illumina Miseq 2 X 250Bp?
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Appreciated 6.9 years ago, created a post with more than 5 votes. For A: How To Assign A Chip-Chip/Chip-Seq Peak To A Target Gene?
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Appreciated 7.0 years ago, created a post with more than 5 votes. For How To Separate Reads From Two Different Species In Exome Dataset?
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Student 7.2 years ago, asked a question with at least 3 up-votes. For Motif Finding For Chip-Seq Data Using Peak Profiles?

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