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25
votes
15
replies
7.7k
views
9 follow
Randomize Read Order In Multigbp Fastq File?
fastq
updated 5 weeks ago by • 0 • written 12.8 years ago by ★ 5.1k
21
votes
5
replies
30k
views
Snp, Dip, Snv Notation
snp
updated 2.1 years ago by 43k • written 12.8 years ago by ★ 5.1k
0
votes
0
replies
12k
views
Comment: C: Automated Plotting Of Seq. Reads In A Bam File
updated 4.6 years ago by 43k • written 12.8 years ago by ★ 5.1k
0
votes
0
replies
7.7k
views
Comment: C: Randomize Read Order In Multigbp Fastq File?
updated 4.6 years ago by 43k • written 12.8 years ago by ★ 5.1k
5
votes
2
replies
1.6k
views
Incremental Additions To An Indexed Bam File?
bam
updated 4.6 years ago by 20 • written 12.9 years ago by ★ 5.1k
1
vote
0
replies
2.8k
views
Answer: A: Retrieving Multiple Sequences For Protein Alignmnets
updated 4.6 years ago by 43k • written 12.2 years ago by ★ 5.1k
1
vote
0
replies
3.9k
views
Answer: A: Ion Torrent Transcriptome Data Sets?
updated 4.6 years ago by 43k • written 12.1 years ago by ★ 5.1k
1
vote
3
replies
5.8k
views
Answer: A: Are Chip-Seq Replicate Data Used As Controls ?
updated 4.6 years ago by 43k • written 12.7 years ago by ★ 5.1k
3
votes
1
reply
10k
views
Answer: A: Quantification And Comparison Of Chip-Seq Peaks
updated 4.6 years ago by 43k • written 12.7 years ago by ★ 5.1k
1
vote
0
replies
2.1k
views
Answer: A: Protein Coding Sequence In Bioperl
updated 4.6 years ago by 43k • written 12.7 years ago by ★ 5.1k
1
vote
2
replies
12k
views
Answer: A: Automated Plotting Of Seq. Reads In A Bam File
updated 4.6 years ago by 43k • written 12.8 years ago by ★ 5.1k
1
vote
0
replies
7.7k
views
Answer: A: Write Script To Combine All Steps Of Bwa
updated 4.6 years ago by 43k • written 12.8 years ago by ★ 5.1k
1
vote
0
replies
5.2k
views
Comment: C: Annotating Every Snp With A Conservation Score Value
updated 4.6 years ago by 43k • written 12.9 years ago by ★ 5.1k
3
votes
3
replies
5.2k
views
Answer: A: Annotating Every Snp With A Conservation Score Value
updated 4.6 years ago by 43k • written 12.9 years ago by ★ 5.1k
3
votes
5
replies
2.8k
views
Answer: A: Functional Divergence
updated 4.6 years ago by 43k • written 12.9 years ago by ★ 5.1k
5
votes
0
replies
2.7k
views
Answer: A: What Is The Largest Collection Of Multiple Alignments?
updated 4.6 years ago by 43k • written 12.9 years ago by ★ 5.1k
4
votes
1
reply
5.0k
views
Answer: A: What Is The Best Way To Simulate Reads From Reference Transcriptome With Certain
updated 4.6 years ago by 43k • written 12.9 years ago by ★ 5.1k
1
vote
0
replies
4.1k
views
Answer: A: List Of All Known Regulatory Regions In Human Genome
updated 4.6 years ago by 43k • written 12.9 years ago by ★ 5.1k
4
votes
1
reply
7.1k
views
Answer: A: Ngs Dna Read Simulator With Quality Scores Available?
updated 4.6 years ago by 43k • written 13.0 years ago by ★ 5.1k
1
vote
0
replies
3.6k
views
Answer: A: Multi Sequences Alignment
updated 4.6 years ago by 43k • written 13.0 years ago by ★ 5.1k
1
vote
0
replies
3.2k
views
Answer: A: Tools Of Estimating Linkage Disequilibrium/Recombination Rate And Rr Hotspot Bas
updated 4.6 years ago by 43k • written 13.0 years ago by ★ 5.1k
0
votes
0
replies
8.8k
views
Comment: C: What Is The Best Method For Aligning Two Genome Assemblies?
updated 4.6 years ago by 43k • written 12.8 years ago by ★ 5.1k
3
votes
1
reply
4.1k
views
Answer: A: Quick Visual Inspection Of Mapping Images For A List Of Regions
updated 4.6 years ago by 43k • written 12.8 years ago by ★ 5.1k
4
votes
0
replies
7.0k
views
Answer: A: How Can I Align A Sequence Against A Pre-Made Alignment?
updated 4.6 years ago by 43k • written 12.7 years ago by ★ 5.1k
6
votes
1
reply
10k
views
Answer: A: How To Assign A Chip-Chip/Chip-Seq Peak To A Target Gene?
updated 4.6 years ago by 43k • written 12.3 years ago by ★ 5.1k
6
votes
1
reply
12k
views
Answer: A: Multiple Sequence Alignment For Cdnas
updated 4.6 years ago by 43k • written 13.6 years ago by ★ 5.1k
0
votes
1
reply
9.5k
views
Comment: C: Building Consensus Trees Of Phyml Bootstraps
updated 4.6 years ago by 43k • written 13.6 years ago by ★ 5.1k
1
vote
0
replies
5.7k
views
Answer: A: Inserting Sequences In A Phylogeny
updated 4.6 years ago by 43k • written 13.0 years ago by ★ 5.1k
11
votes
9
replies
3.8k
views
Transcriptome Assembly Of Illumina Reads On Low-Mem Machines?
transcriptome assembly memory
updated 5.0 years ago by 20 • written 12.9 years ago by ★ 5.1k
0
votes
0
replies
8.4k
views
Comment: C: Indexing Compressed Fastq-Like Data
updated 5.1 years ago by 43k • written 13.7 years ago by ★ 5.1k
9
votes
0
replies
5.8k
views
Answer: A: Web Resources To Find Cancer Indication Where A Given Gene Is Amplified
updated 5.2 years ago by 43k • written 13.6 years ago by ★ 5.1k
105
votes
31
replies
94k
views
18 follow
Best Way To Merge A Many Thousand Small Bam Files Into One Big Bam File?
bam picard samtools merge
updated 4 months ago by ▴ 450 • written 12.8 years ago by ★ 5.1k
0
votes
0
replies
2.3k
views
Answer: A: Masking Uncovered Segments Of Assembled Contig
updated 5.6 years ago by 43k • written 13.8 years ago by ★ 5.1k
1
vote
0
replies
3.2k
views
Answer: A: Ensembl Compara Perl Api Taxon->Classification Error
updated 5.6 years ago by 43k • written 13.8 years ago by ★ 5.1k
6
votes
1
reply
12k
views
Answer: A: What Are The Public Sql Servers For Bioinformatics ?
updated 5.6 years ago by 43k • written 12.9 years ago by ★ 5.1k
32
votes
10
replies
8.7k
views
6 follow
Ucsc/Ensembl Bam Converter?
bam ucsc ensembl reference
updated 15 months ago by 43k • written 12.8 years ago by ★ 5.1k
7
votes
3
replies
3.8k
views
Genome Reference For Bam Files In Ensembl Vs Ucsc?
bam ensembl ucsc reference next-gen sequencing
updated 7.0 years ago by 20 • written 12.9 years ago by ★ 5.1k
7
votes
7
replies
3.9k
views
Predictability Of Regulatory States In New Cell Lines Or Tissues From Existing Encode Segmentations?
encode prediction
updated 7.0 years ago by 20 • written 12.1 years ago by ★ 5.1k
23
votes
11
replies
3.7k
views
6 follow
How To Separate Reads From Two Different Species In Exome Dataset?
exome
updated 7.3 years ago by 20 • written 12.3 years ago by ★ 5.1k
6
votes
1
reply
3.1k
views
Answer: A: Gene Prediction
updated 8.6 years ago by 54k • written 12.8 years ago by ★ 5.1k
9
votes
7
replies
2.5k
views
Resolving Approximate Translation For Incomplete Reconstructed Transcript
translation transcript
updated 8.6 years ago by 20 • written 13.8 years ago by ★ 5.1k
4
votes
4
replies
2.5k
views
Searching 200-400Bp Matches Against Mammalian Genome (~Human-Mouse Distance)
blast search
updated 8.8 years ago by 20 • written 13.0 years ago by ★ 5.1k
10
votes
3
replies
4.7k
views
Has Anyone Successfully Used Allpaths-Lg On A >500Mb Genome With The Minimal Short+Kb Library Sets?
assembly illumina
updated 9.6 years ago by 20 • written 12.9 years ago by ★ 5.1k
8
votes
13
replies
3.1k
views
Chip-Seq Peak Caller Able To Find Peaks Split By Indels?
chip-seq peak-calling indel structural
updated 10.2 years ago by 20 • written 12.9 years ago by ★ 5.1k
19
votes
3
replies
3.5k
views
Phylogenetic History Of The Main Mouse Strains?
publication
updated 10.3 years ago by 20 • written 12.8 years ago by ★ 5.1k
13
votes
3
replies
5.5k
views
Filter Polya/T And Other Repeats In Illumina Reads
assembly
updated 10.4 years ago by ▴ 610 • written 13.2 years ago by ★ 5.1k
44
votes
11
replies
6.4k
views
9 follow
Any Examples Of Mturk/Crowdsourcing Projects In Bioinformatics?
analysis
updated 10.8 years ago by 4.9k • written 13.0 years ago by ★ 5.1k
1
vote
1
reply
2.1k
views
Equivalent To Price Per Base In Massspec Peptide Fragment Sequencing?
sequencing mass-spec
updated 12.0 years ago by ★ 2.6k • written 12.0 years ago by ★ 5.1k
0
votes
0
replies
2.5k
views
Comment: C: Eqtl Data In Dogs?
12.1 years ago by 2184687-1231-83- ★ 5.1k
0
votes
0
replies
4.5k
views
Comment: C: Tools For De Novo Assembly Of Mirnas?
12.1 years ago by 2184687-1231-83- ★ 5.1k
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