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Comment: Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
10 weeks ago by dsull ★ 6.2k
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778
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Comment: Comment: Installing Cell Ranger
10 weeks ago by dsull ★ 6.2k
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485
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Comment: Comment: DESeq2 and normalization
11 weeks ago by dsull ★ 6.2k
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677
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Comment: Comment: STAR aligner options
11 weeks ago by dsull ★ 6.2k
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1.0k
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Comment: Comment: Only one read per run - Trying to use CellRangerv7
11 weeks ago by dsull ★ 6.2k
0
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1
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677
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Comment: Comment: STAR aligner options
11 weeks ago by dsull ★ 6.2k
1
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1
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485
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Answer: Answer: DESeq2 and normalization
11 weeks ago by dsull ★ 6.2k
0
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7.7k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
11 weeks ago by dsull ★ 6.2k
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1
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7.7k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
11 weeks ago by dsull ★ 6.2k
1
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1
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862
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Comment: Comment: cutadapt not trimming all adapters in PE Illumina sequencing
12 weeks ago by dsull ★ 6.2k
1
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1
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862
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
12 weeks ago by dsull ★ 6.2k
0
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282
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Comment: Comment: DEG (Differential expression gene) analysis
12 weeks ago by dsull ★ 6.2k
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1
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282
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Answer: Answer: DEG (Differential expression gene) analysis
12 weeks ago by dsull ★ 6.2k
3
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1
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437
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Comment: Comment: Average expression of a sample in single-cell data
12 weeks ago by dsull ★ 6.2k
1
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469
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Answer: Answer: scRNAseq normalization
12 weeks ago by dsull ★ 6.2k
0
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0
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197
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Answer: Answer: STAR --sjdbGTFfile in alignment step
3 months ago by dsull ★ 6.2k
1
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0
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390
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Comment: Comment: RNA-seq bam file normalization
3 months ago by dsull ★ 6.2k
1
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1
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375
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
3 months ago by dsull ★ 6.2k
2
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0
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428
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Comment: Comment: How I should set `STAR` parameters to keep all the intronic reads?
3 months ago by dsull ★ 6.2k
4
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1
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428
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Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
3 months ago by dsull ★ 6.2k
1
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1
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703
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Comment: Comment: Huge decrease of BUS records using bustools
3 months ago by dsull ★ 6.2k
0
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1
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312
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Comment: Comment: Why does Phred+ encoding changes after trimming fastq files??
3 months ago by dsull ★ 6.2k
3
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0
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666
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Answer: Answer: Would reaching out to local labs and startups help with my career transition?
3 months ago by dsull ★ 6.2k
0
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0
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683
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Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 3 months ago by 44k • written 3 months ago by ★ 6.2k
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0
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683
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Comment: Comment: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
3 months ago by dsull ★ 6.2k
2
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0
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602
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Comment: Comment: How does kallisto handle multi mapped reads?
3 months ago by dsull ★ 6.2k
0
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0
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293
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Answer: Answer: Using tophat2 output for kallisto
3 months ago by dsull ★ 6.2k
0
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2
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602
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Comment: Comment: How does kallisto handle multi mapped reads?
3 months ago by dsull ★ 6.2k
2
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1
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436
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Answer: Answer: bulk seq vs. sc-seq
4 months ago by dsull ★ 6.2k
0
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1
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657
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Comment: Comment: Differential expression analysis with very high duplication rate
4 months ago by dsull ★ 6.2k
0
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1
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657
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Answer: Answer: Differential expression analysis with very high duplication rate
4 months ago by dsull ★ 6.2k
1
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0
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464
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Answer: Answer: How to do DESeq2 on Kallisto Data
4 months ago by dsull ★ 6.2k
0
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1
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537
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Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
4 months ago by dsull ★ 6.2k
1
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0
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537
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Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
4 months ago by dsull ★ 6.2k
1
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1
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749
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Comment: Comment: Why employ normalization methods, and how can they be utilized in DEG analysis?
4 months ago by dsull ★ 6.2k
2
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1
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756
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Comment: Comment: RNA seq, correlation, gene expression, STAR count
4 months ago by dsull ★ 6.2k
3
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1
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756
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Answer: Answer: RNA seq, correlation, gene expression, STAR count
4 months ago by dsull ★ 6.2k
0
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0
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1.2k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
4 months ago by dsull ★ 6.2k
2
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1
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1.2k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
4 months ago by dsull ★ 6.2k
0
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0
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146k
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Comment: Comment: The Biostar Handbook. A bioinformatics e-book for beginners.
4 months ago by dsull ★ 6.2k
1
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1
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1.2k
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Answer: Answer: I would like to exclude rRNA in RSEM and quantify it.
4 months ago by dsull ★ 6.2k
0
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0
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1.2k
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
4 months ago by dsull ★ 6.2k
1
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1
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1.2k
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
4 months ago by dsull ★ 6.2k
0
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1
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1.2k
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
4 months ago by dsull ★ 6.2k
0
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1
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1.2k
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
4 months ago by dsull ★ 6.2k
2
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2
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1.2k
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Comment: Comment: Can I estimate RNA velocity in Visium Spatial Gene Expression for FFPE
5 months ago by dsull ★ 6.2k
1
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1
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1.2k
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Comment: Comment: Can I estimate RNA velocity in Visium Spatial Gene Expression for FFPE
5 months ago by dsull ★ 6.2k
0
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0
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2.4k
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Comment: Comment: Determining computer time required
5 months ago by dsull ★ 6.2k
0
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0
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723
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Comment: Comment: Problem in Salmon when indexing Rattus_norvegicus
5 months ago by dsull ★ 6.2k
1
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0
replies
2.4k
views
Comment: Comment: Determining computer time required
5 months ago by dsull ★ 6.2k
637 results • Page 2 of 13
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