chipseq over various genomic locations
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10.1 years ago
kanwarjag ★ 1.2k

I am looking for a some help to broadly understand how a typical Chipseq peaks will look like over exon, genebody as well as TES. What a pattern of peaks over gene body / exon suggest.

Could some one point me to a paper/ document or figure. I googled and checked on pubmed these terms but cannot find something comprehensively.

ChIP-Seq • 1.7k views
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10.1 years ago
Ian 6.0k

There is a Nature article by ENCODE that includes a nice table summarising the distribution of different histone marks (table 2).

If you want to visualise histone mark data using ChIP-seq mapped reads I can recommend ngs-plot.

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Thanks Ian. I have used NGS plot however what I am looking for is to get explanations about plots over gene body and exons from Chipseq data.

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