Question: Looking for novel lncRNAs using PhyloCSF
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gravatar for g.quaiferyan
5.3 years ago by
Australia
g.quaiferyan0 wrote:

Hey

The majority of lncRNAs aren't properly annotated so I recently generated a GTF file from my RNA-seq dataset using cufflinks. Now I want to go through the GTF and only pull out any sequences which aren't annotated lncRNAs and which have a "lncRNA-like" signatures using PhyloCSF. Does anyone know how to do this?

thanks

 

rna-seq alignment • 1.5k views
ADD COMMENTlink written 5.3 years ago by g.quaiferyan0
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