Question

the bam file generated by bwa mem mode don't have SM tag?

0

Entering edit mode

9.9 years ago

naruto1nrt ▴ 40

I start to use mem mode recently,but when i found it not have SM tag in bam file. is there any parameter for this?

alignment • 2.0k views

ADD COMMENT • link updated 9.9 years ago by Devon Ryan 104k • written 9.9 years ago by naruto1nrt ▴ 40

score 2 · Answer 1 · 2014-05-30

2

Entering edit mode

9.9 years ago

Devon Ryan 104k

It's the -R option, for example -R "@RG\tID:Seq01p\tSM:Seq01\tPL:ILLUMINA\tPI:330".

ADD COMMENT • link 9.9 years ago by Devon Ryan 104k