I recently collected some SNPs related with one disease. LD calculation for SNP expansion has been done; I found lots of SNPs are mapped to intergenic regions.
From knowledge of GWAS references, SNPs in this region can indeed also regulate gene expression. But so far I have not found any SNP annotation database or sysmatic explaination of this kind of SNPs. Could anyone here share their point of how to do this work?
Also, some papers mentioned the database of lincRNA including miRNA and >200bp RNA region, but still I have not found any entries for a database (Ensembl mentioned in gene annotation, but I cannot find the entries). Could anyone offer your kind help?
Anyway, thanks a lot!