Question: how to find proteins nearest neighbors
0
gravatar for heath
6.1 years ago by
heath20
United States
heath20 wrote:

Hey all,

if I have a protein gi? is there a fast way to find its nearest global structure/sequence neighbor and retrieve top 10/20 hits as protein gi's along with e-value and sequence/structure identities etc? can blastp command line obtain these?

Thanks!


 

blast alignment sequence • 1.2k views
ADD COMMENTlink modified 6.1 years ago • written 6.1 years ago by heath20

Yes. Blastp does. Use NR database. It retrieves you all the nearest sequences from different organisms.

ADD REPLYlink written 6.1 years ago by Prakki Rama2.4k
0
gravatar for heath
6.1 years ago by
heath20
United States
heath20 wrote:

No problem...I have solved this question. thx!

ADD COMMENTlink modified 6.1 years ago • written 6.1 years ago by heath20
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