Entering edit mode
                    11.4 years ago
        muhe1985
        
    
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    20
    I am from wet lab and in the very beginning of my bioinformatics learning curve. Here are some rookie questions:
- How to blast whole genome for putative transcription factor binding sites of which a JASPAR ID is available? After I am done with it, can I view it like I am viewing a peak calling BED file in UCSC genome browser?
- I have with me a BED file from published ChIP-Seq data, can I search for putative transcription factor binding site of another transcription factor I am interested in within the peaks of the BED file? Furthermore, can I search for putative binding site around the peaks in such given BED file?