Looking review paper about; From mapping NGS reads to quantification of gene expression

Question

[jack]

Hi all,

 

I'm looknig good review paper, which discuss diffrent tools and softwares from mapping NGS reads to quantifying gene expression levels.

Would someone give some suggestions ?

 

Answer 1

[Vivek]

Systematic evaluation of spliced alignment programs for RNA-seq data

http://www.nature.com/nmeth/journal/v10/n12/full/nmeth.2722.html

Assessment of transcript reconstruction methods for RNA-seq

http://www.nature.com/nmeth/journal/v10/n12/full/nmeth.2714.html