Question

Protein Coding Sequence

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12.8 years ago

Gleb ▴ 10

Hello!!

I'm very uncomfortable, but could you help me. Let's see at this link http://www.ncbi.nlm.nih.gov/protein In menu Search (bee) AND "Apis mellifera"[porgn:__txid7460]. And choose 'RefSeq ( 10618 )' right of the screen (in the Filter menu).

We have 10 618 records. Let's click one of them. In here http://www.ncbi.nlm.nih.gov/protein/NP_001011614.1 we can see amino acid code of the protein. But click CDS link.

Ok. Now we can see nucleotide code of the protein. http://www.ncbi.nlm.nih.gov/nuccore/58585171?from=135&to=638&report=gbwithparts

Please, help me. It's really? This is really nucletide code of protein? I very need it.

Sorry for bad english.

translation cds rna • 2.0k views

ADD COMMENT • link updated 12.8 years ago by Bert Overduin ★ 3.7k • written 12.8 years ago by Gleb ▴ 10

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I don't like the "protein-dna-translation" tag since it is RNA not DNA being translated. But it is in the tag database. Should we replace all instances by just "translation" and thus effectively delete it?

ADD REPLY • link 12.8 years ago by Chris Evelo 10k

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Please, tell me how to do this ( delete a tag ).

ADD REPLY • link 12.8 years ago by Gleb ▴ 10

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Chris: I concur, we've got the translation tag for that which is more commonly used and that should be reasonably clear.

ADD REPLY • link 12.8 years ago by Michael Schubert ★ 7.1k

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In the end I only deleted it here. The other three instances actually are about (programmatic) translations between DNA and protein.

ADD REPLY • link 12.8 years ago by Chris Evelo 10k

score 2 · Answer 1 · 2011-07-25

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12.8 years ago

Bert Overduin ★ 3.7k

Yes, it is. What leads you to believe it's not?

ADD COMMENT • link 12.8 years ago by Bert Overduin ★ 3.7k

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No offense, but I strongly recommend you spend at least a few hours reading up on the basics of molecular biology.

ADD REPLY • link 12.8 years ago by Bert Overduin ★ 3.7k

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However, keep in mind that this does by no means need to be the exact sequence as it occurs in the genome (splicing of introns, etc.)

ADD REPLY • link 12.8 years ago by Michael Schubert ★ 7.1k

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Grand Thank!

I have no biological education. For this reason, I'm not sure.

Could you tell me, is it true that this code always starts with a triplet 'atg' and end termination?

Another question. There are 10618 records in this site. I need all of them in one ore some files. Do you know, BioPerl or Entrez Utilities can help to get it? May be ahother programm?

I need nucleotide code for all proteins foe each organism.

ADD REPLY • link 12.8 years ago by Gleb ▴ 10