Question: Metacluster / MetaAnnotator- has anyone had success?
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gravatar for susan.klein
5.4 years ago by
susan.klein50
Oceania
susan.klein50 wrote:

Hi,

 

has anyone managed to get Metacluster or MetaAnnotator (beta) to work? See: http://i.cs.hku.hk/~alse/MetaCluster/

I always get either memory related errors (I have 30 cores and 96GB RAM) or messages that there are not enough clusters, using gut sample Illumina Miseq paired end data with >10 million reads. Any pointers to other possible shotgun metagenomic binning programs would be useful too! McCluster also failed for me - no clusters. I have submitted data to MGRAST, which undoubtedly does a good job, but I would like to compare ti to some other approaches.

 

Thanks,

 

T.

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