has anyone managed to get Metacluster or MetaAnnotator (beta) to work? See: http://i.cs.hku.hk/~alse/MetaCluster/
I always get either memory related errors (I have 30 cores and 96GB RAM) or messages that there are not enough clusters, using gut sample Illumina Miseq paired end data with >10 million reads. Any pointers to other possible shotgun metagenomic binning programs would be useful too! McCluster also failed for me - no clusters. I have submitted data to MGRAST, which undoubtedly does a good job, but I would like to compare ti to some other approaches.