Question: BioJava: How to get only frame 1 of DNA to Protein translation?
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gravatar for lifeh2o
5.2 years ago by
lifeh2o0
Pakistan
lifeh2o0 wrote:

How can I get only frame 1 when translating DNA to protein.

I am using the following code to translate to protein but output is a little different from http://translate-protein.com/ (Frame 1) and http://web.expasy.org/translate/ (Frame 1).

SymbolList symL = DNATools.createDNA(input); 

//transcribe to RNA (after biojava 1.4 use this method instead)
symL = DNATools.toRNA(symL);
//translate to protein
symL = RNATools.translate(symL);

out1 = symL.seqString();

Output Difference : http://www.diffnow.com/?report=sd9t4

I am using BioJava 1.7.1 in Taverna

ADD COMMENTlink written 5.2 years ago by lifeh2o0

How do i do that?

ADD REPLYlink written 5.2 years ago by lifeh2o0
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