Hi there,
I am using the tool RNASeqReadSimulator (http://alumni.cs.ucr.edu/~liw/rnaseqreadsimulator.html), in order to simulate RNA-seq reads. In the fist script (there are 3), it is possible to specify expression values to the genes.
python genexplvprofile.py -h -e/--lognormal mu,sigma Specify the mean and variance of the lognormal distribution used to assign expression levels. Default -4,4
I'm not very good at statistics and I would like to know, which parameters of mu and sigma should be OK if I want to have all the genes expressed in my simulated data.
Any idea or suggestion..?
Thanks
When in doubt the defaults are a good start
Yes, sure. But I was thinking that if I put a HIGH mean value and LOW variance, maybe can I simulate to have all the genes expressed? But I don't know which number is "high" or "low".. and maybe it depends on the number of genes...